Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19105

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19100 and BWI76_RS19105 are separated by 459 nucleotidesBWI76_RS19105 and BWI76_RS19110 are separated by 961 nucleotides BWI76_RS19100: BWI76_RS19100 - putative acid phosphatase, at 3,968,891 to 3,969,520 _RS19100 BWI76_RS19105: BWI76_RS19105 - GalU regulator GalF, at 3,969,980 to 3,970,876 _RS19105 BWI76_RS19110: BWI76_RS19110 - hypothetical protein, at 3,971,838 to 3,973,424 _RS19110 Position (kb) 3969 3970 3971Strain fitness (log2 ratio) -1 0 1 2 3 4at 3969.091 kb on + strand, within BWI76_RS19100at 3969.347 kb on - strand, within BWI76_RS19100at 3969.400 kb on - strand, within BWI76_RS19100at 3969.410 kb on - strand, within BWI76_RS19100at 3969.415 kb on - strand, within BWI76_RS19100at 3969.470 kb on + strandat 3969.470 kb on + strandat 3969.478 kb on - strandat 3969.478 kb on - strandat 3969.478 kb on - strandat 3969.483 kb on - strandat 3969.582 kb on + strandat 3969.590 kb on - strandat 3969.618 kb on + strandat 3969.675 kb on + strandat 3969.887 kb on + strandat 3969.895 kb on - strandat 3969.897 kb on - strandat 3970.085 kb on + strand, within BWI76_RS19105at 3970.092 kb on - strand, within BWI76_RS19105at 3970.183 kb on + strand, within BWI76_RS19105at 3970.183 kb on + strand, within BWI76_RS19105at 3970.339 kb on + strand, within BWI76_RS19105at 3970.384 kb on + strand, within BWI76_RS19105at 3970.392 kb on - strand, within BWI76_RS19105at 3970.432 kb on + strand, within BWI76_RS19105at 3970.598 kb on + strand, within BWI76_RS19105at 3970.749 kb on + strand, within BWI76_RS19105at 3970.757 kb on - strand, within BWI76_RS19105at 3970.762 kb on + strand, within BWI76_RS19105at 3970.762 kb on + strand, within BWI76_RS19105at 3970.828 kb on + strandat 3970.828 kb on + strandat 3970.837 kb on - strandat 3970.837 kb on - strandat 3970.837 kb on - strandat 3970.837 kb on - strandat 3970.837 kb on - strandat 3970.837 kb on - strandat 3970.882 kb on + strandat 3970.890 kb on + strandat 3970.890 kb on + strandat 3970.890 kb on - strandat 3970.890 kb on - strandat 3970.898 kb on - strandat 3970.906 kb on - strandat 3970.918 kb on + strandat 3970.922 kb on - strandat 3970.952 kb on + strandat 3970.952 kb on + strandat 3970.954 kb on + strandat 3970.954 kb on + strandat 3970.960 kb on - strandat 3970.960 kb on - strandat 3970.962 kb on + strandat 3970.962 kb on + strandat 3970.962 kb on - strandat 3970.964 kb on + strandat 3970.964 kb on + strandat 3970.967 kb on - strandat 3970.970 kb on - strandat 3970.970 kb on - strandat 3970.970 kb on - strandat 3971.014 kb on + strandat 3971.037 kb on - strandat 3971.145 kb on - strandat 3971.197 kb on + strandat 3971.197 kb on + strandat 3971.197 kb on + strandat 3971.203 kb on + strandat 3971.206 kb on - strandat 3971.208 kb on + strandat 3971.216 kb on - strandat 3971.216 kb on - strandat 3971.216 kb on - strandat 3971.216 kb on - strandat 3971.216 kb on - strandat 3971.216 kb on - strandat 3971.242 kb on - strandat 3971.288 kb on + strandat 3971.313 kb on + strandat 3971.346 kb on - strandat 3971.348 kb on + strandat 3971.349 kb on - strandat 3971.349 kb on - strandat 3971.356 kb on - strandat 3971.361 kb on - strandat 3971.403 kb on + strandat 3971.416 kb on - strandat 3971.467 kb on + strandat 3971.468 kb on - strandat 3971.475 kb on - strandat 3971.475 kb on - strandat 3971.533 kb on + strandat 3971.533 kb on + strandat 3971.533 kb on + strandat 3971.541 kb on - strandat 3971.560 kb on + strandat 3971.560 kb on + strandat 3971.560 kb on + strandat 3971.560 kb on + strandat 3971.567 kb on - strandat 3971.568 kb on - strandat 3971.568 kb on - strandat 3971.568 kb on - strandat 3971.568 kb on - strandat 3971.578 kb on - strandat 3971.588 kb on - strandat 3971.611 kb on + strandat 3971.675 kb on - strandat 3971.684 kb on + strandat 3971.684 kb on + strandat 3971.692 kb on - strandat 3971.692 kb on - strandat 3971.692 kb on - strandat 3971.692 kb on - strandat 3971.711 kb on + strandat 3971.788 kb on + strandat 3971.799 kb on + strandat 3971.807 kb on - strandat 3971.807 kb on - strandat 3971.807 kb on - strandat 3971.807 kb on - strandat 3971.809 kb on + strandat 3971.809 kb on + strandat 3971.809 kb on + strandat 3971.809 kb on + strandat 3971.809 kb on - strandat 3971.816 kb on - strandat 3971.817 kb on - strandat 3971.817 kb on - strandat 3971.817 kb on - strandat 3971.817 kb on - strandat 3971.824 kb on + strandat 3971.824 kb on + strandat 3971.832 kb on - strandat 3971.856 kb on + strandat 3971.864 kb on - strandat 3971.869 kb on - strandat 3971.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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3,969,091 + BWI76_RS19100 0.32 -1.3
3,969,347 - BWI76_RS19100 0.72 +0.1
3,969,400 - BWI76_RS19100 0.81 -0.5
3,969,410 - BWI76_RS19100 0.82 -0.9
3,969,415 - BWI76_RS19100 0.83 +0.4
3,969,470 + -1.1
3,969,470 + -1.1
3,969,478 - -1.2
3,969,478 - -1.1
3,969,478 - -0.8
3,969,483 - -1.2
3,969,582 + -1.1
3,969,590 - -0.4
3,969,618 + +0.1
3,969,675 + +0.2
3,969,887 + -0.4
3,969,895 - +0.3
3,969,897 - -0.3
3,970,085 + BWI76_RS19105 0.12 +1.4
3,970,092 - BWI76_RS19105 0.12 +3.1
3,970,183 + BWI76_RS19105 0.23 +1.9
3,970,183 + BWI76_RS19105 0.23 +0.8
3,970,339 + BWI76_RS19105 0.40 +2.4
3,970,384 + BWI76_RS19105 0.45 +2.6
3,970,392 - BWI76_RS19105 0.46 +2.6
3,970,432 + BWI76_RS19105 0.50 +2.1
3,970,598 + BWI76_RS19105 0.69 +2.4
3,970,749 + BWI76_RS19105 0.86 +3.9
3,970,757 - BWI76_RS19105 0.87 +2.9
3,970,762 + BWI76_RS19105 0.87 +2.5
3,970,762 + BWI76_RS19105 0.87 +3.1
3,970,828 + +4.3
3,970,828 + -0.2
3,970,837 - +2.6
3,970,837 - +1.7
3,970,837 - +3.1
3,970,837 - +2.6
3,970,837 - +2.6
3,970,837 - +2.6
3,970,882 + +3.3
3,970,890 + +4.1
3,970,890 + +3.4
3,970,890 - +3.0
3,970,890 - +2.5
3,970,898 - +2.5
3,970,906 - +1.6
3,970,918 + +3.2
3,970,922 - +0.9
3,970,952 + +1.8
3,970,952 + +2.5
3,970,954 + +1.5
3,970,954 + +3.0
3,970,960 - -0.8
3,970,960 - +2.4
3,970,962 + +2.2
3,970,962 + +2.8
3,970,962 - +0.8
3,970,964 + +1.4
3,970,964 + +2.9
3,970,967 - +1.1
3,970,970 - +0.9
3,970,970 - -0.4
3,970,970 - +2.4
3,971,014 + +0.3
3,971,037 - +0.0
3,971,145 - +0.0
3,971,197 + +0.8
3,971,197 + -1.3
3,971,197 + -0.7
3,971,203 + -0.9
3,971,206 - -0.6
3,971,208 + -1.2
3,971,216 - -0.3
3,971,216 - +0.3
3,971,216 - -1.0
3,971,216 - +0.4
3,971,216 - -0.1
3,971,216 - -1.1
3,971,242 - +0.4
3,971,288 + -0.2
3,971,313 + -0.0
3,971,346 - -0.3
3,971,348 + -0.1
3,971,349 - -0.6
3,971,349 - -0.1
3,971,356 - +0.4
3,971,361 - -0.1
3,971,403 + +1.7
3,971,416 - -0.1
3,971,467 + +0.3
3,971,468 - +0.9
3,971,475 - +1.4
3,971,475 - +0.2
3,971,533 + +0.7
3,971,533 + +0.3
3,971,533 + -0.1
3,971,541 - -0.7
3,971,560 + -0.7
3,971,560 + -0.1
3,971,560 + +0.3
3,971,560 + +0.1
3,971,567 - +0.0
3,971,568 - -0.3
3,971,568 - -0.7
3,971,568 - -0.2
3,971,568 - +0.3
3,971,578 - -0.6
3,971,588 - +0.4
3,971,611 + +0.3
3,971,675 - +0.7
3,971,684 + +1.3
3,971,684 + -0.0
3,971,692 - +0.6
3,971,692 - +1.8
3,971,692 - +0.7
3,971,692 - -0.4
3,971,711 + -0.1
3,971,788 + +0.3
3,971,799 + +0.7
3,971,807 - -1.3
3,971,807 - -0.0
3,971,807 - +0.1
3,971,807 - -0.2
3,971,809 + +0.2
3,971,809 + -0.1
3,971,809 + +2.9
3,971,809 + +0.8
3,971,809 - +0.5
3,971,816 - +0.2
3,971,817 - +0.5
3,971,817 - -0.9
3,971,817 - +0.7
3,971,817 - +0.5
3,971,824 + -0.3
3,971,824 + -0.2
3,971,832 - -1.7
3,971,856 + +0.5
3,971,864 - -0.1
3,971,869 - -0.3
3,971,874 - +0.1

Or see this region's nucleotide sequence