Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18990

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18980 and BWI76_RS18985 are separated by 13 nucleotidesBWI76_RS18985 and BWI76_RS18990 overlap by 1 nucleotides BWI76_RS18980: BWI76_RS18980 - glycosyl transferase, at 3,936,388 to 3,938,280 _RS18980 BWI76_RS18985: BWI76_RS18985 - LPS O-antigen ABC transporter ATP-binding protein, at 3,938,294 to 3,939,034 _RS18985 BWI76_RS18990: BWI76_RS18990 - ABC transporter permease, at 3,939,034 to 3,939,801 _RS18990 Position (kb) 3939 3940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3938.168 kb on - strandat 3938.186 kb on - strandat 3938.186 kb on - strandat 3938.188 kb on - strandat 3938.192 kb on + strandat 3938.193 kb on - strandat 3938.200 kb on - strandat 3938.200 kb on - strandat 3938.200 kb on - strandat 3938.200 kb on - strandat 3938.233 kb on - strandat 3938.245 kb on - strandat 3938.250 kb on - strandat 3938.266 kb on - strandat 3938.273 kb on - strandat 3938.408 kb on - strand, within BWI76_RS18985at 3938.411 kb on - strand, within BWI76_RS18985at 3938.415 kb on - strand, within BWI76_RS18985at 3938.425 kb on + strand, within BWI76_RS18985at 3938.458 kb on - strand, within BWI76_RS18985at 3938.459 kb on - strand, within BWI76_RS18985at 3938.459 kb on - strand, within BWI76_RS18985at 3938.583 kb on - strand, within BWI76_RS18985at 3938.594 kb on - strand, within BWI76_RS18985at 3938.619 kb on - strand, within BWI76_RS18985at 3938.666 kb on - strand, within BWI76_RS18985at 3938.674 kb on - strand, within BWI76_RS18985at 3938.755 kb on - strand, within BWI76_RS18985at 3938.755 kb on - strand, within BWI76_RS18985at 3938.770 kb on - strand, within BWI76_RS18985at 3938.798 kb on - strand, within BWI76_RS18985at 3938.828 kb on - strand, within BWI76_RS18985at 3938.833 kb on - strand, within BWI76_RS18985at 3938.833 kb on - strand, within BWI76_RS18985at 3938.833 kb on - strand, within BWI76_RS18985at 3938.848 kb on - strand, within BWI76_RS18985at 3938.848 kb on - strand, within BWI76_RS18985at 3938.852 kb on - strand, within BWI76_RS18985at 3938.852 kb on - strand, within BWI76_RS18985at 3938.869 kb on - strand, within BWI76_RS18985at 3938.869 kb on - strand, within BWI76_RS18985at 3938.870 kb on - strand, within BWI76_RS18985at 3938.870 kb on - strand, within BWI76_RS18985at 3938.870 kb on - strand, within BWI76_RS18985at 3938.870 kb on - strand, within BWI76_RS18985at 3938.874 kb on - strand, within BWI76_RS18985at 3938.876 kb on - strand, within BWI76_RS18985at 3938.876 kb on - strand, within BWI76_RS18985at 3938.876 kb on - strand, within BWI76_RS18985at 3938.876 kb on - strand, within BWI76_RS18985at 3938.876 kb on - strand, within BWI76_RS18985at 3938.923 kb on - strand, within BWI76_RS18985at 3938.945 kb on - strand, within BWI76_RS18985at 3938.974 kb on - strandat 3939.040 kb on - strandat 3939.043 kb on - strandat 3939.099 kb on - strandat 3939.104 kb on - strandat 3939.118 kb on - strand, within BWI76_RS18990at 3939.120 kb on - strand, within BWI76_RS18990at 3939.120 kb on - strand, within BWI76_RS18990at 3939.120 kb on - strand, within BWI76_RS18990at 3939.192 kb on - strand, within BWI76_RS18990at 3939.193 kb on - strand, within BWI76_RS18990at 3939.193 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.199 kb on - strand, within BWI76_RS18990at 3939.209 kb on - strand, within BWI76_RS18990at 3939.266 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strand, within BWI76_RS18990at 3939.278 kb on - strandat 3939.357 kb on - strand, within BWI76_RS18990at 3939.358 kb on - strand, within BWI76_RS18990at 3939.379 kb on - strand, within BWI76_RS18990at 3939.393 kb on - strand, within BWI76_RS18990at 3939.394 kb on - strand, within BWI76_RS18990at 3939.394 kb on - strand, within BWI76_RS18990at 3939.394 kb on - strand, within BWI76_RS18990at 3939.394 kb on - strand, within BWI76_RS18990at 3939.418 kb on - strand, within BWI76_RS18990at 3939.423 kb on - strand, within BWI76_RS18990at 3939.460 kb on - strand, within BWI76_RS18990at 3939.460 kb on - strand, within BWI76_RS18990at 3939.460 kb on - strand, within BWI76_RS18990at 3939.460 kb on - strand, within BWI76_RS18990at 3939.460 kb on - strand, within BWI76_RS18990at 3939.471 kb on - strand, within BWI76_RS18990at 3939.488 kb on - strand, within BWI76_RS18990at 3939.584 kb on - strand, within BWI76_RS18990at 3939.591 kb on - strand, within BWI76_RS18990at 3939.594 kb on - strand, within BWI76_RS18990at 3939.594 kb on - strand, within BWI76_RS18990at 3939.746 kb on - strandat 3939.747 kb on - strandat 3939.836 kb on + strandat 3939.844 kb on - strandat 3939.844 kb on - strandat 3939.844 kb on - strandat 3939.849 kb on - strandat 3939.849 kb on - strandat 3939.849 kb on - strandat 3939.849 kb on - strandat 3939.851 kb on - strandat 3939.851 kb on - strandat 3939.859 kb on - strandat 3939.900 kb on - strandat 3939.905 kb on - strandat 3939.912 kb on + strandat 3939.913 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.918 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.920 kb on - strandat 3939.928 kb on - strandat 3939.946 kb on - strandat 3939.973 kb on + strandat 3939.974 kb on - strandat 3939.974 kb on - strandat 3939.986 kb on - strandat 3940.006 kb on + strandat 3940.014 kb on - strandat 3940.049 kb on - strandat 3940.275 kb on - strandat 3940.287 kb on + strandat 3940.348 kb on + strandat 3940.351 kb on - strandat 3940.356 kb on - strandat 3940.383 kb on + strandat 3940.383 kb on + strandat 3940.387 kb on - strandat 3940.391 kb on - strandat 3940.397 kb on - strandat 3940.408 kb on + strandat 3940.409 kb on + strandat 3940.416 kb on - strandat 3940.478 kb on + strandat 3940.486 kb on - strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.523 kb on - strandat 3940.553 kb on + strandat 3940.571 kb on + strandat 3940.581 kb on + strandat 3940.583 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.588 kb on + strandat 3940.594 kb on - strandat 3940.594 kb on - strandat 3940.594 kb on - strandat 3940.596 kb on - strandat 3940.605 kb on + strandat 3940.609 kb on + strandat 3940.610 kb on + strandat 3940.617 kb on - strandat 3940.618 kb on - strandat 3940.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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3,938,168 - -0.1
3,938,186 - -1.1
3,938,186 - -0.5
3,938,188 - -0.6
3,938,192 + +0.1
3,938,193 - -1.0
3,938,200 - -1.4
3,938,200 - -0.1
3,938,200 - -1.2
3,938,200 - -0.1
3,938,233 - -0.9
3,938,245 - -0.2
3,938,250 - -0.4
3,938,266 - -0.7
3,938,273 - -0.1
3,938,408 - BWI76_RS18985 0.15 -0.8
3,938,411 - BWI76_RS18985 0.16 -2.4
3,938,415 - BWI76_RS18985 0.16 -2.0
3,938,425 + BWI76_RS18985 0.18 +0.4
3,938,458 - BWI76_RS18985 0.22 -1.7
3,938,459 - BWI76_RS18985 0.22 -0.7
3,938,459 - BWI76_RS18985 0.22 -0.7
3,938,583 - BWI76_RS18985 0.39 -0.7
3,938,594 - BWI76_RS18985 0.40 -2.0
3,938,619 - BWI76_RS18985 0.44 -2.3
3,938,666 - BWI76_RS18985 0.50 -1.6
3,938,674 - BWI76_RS18985 0.51 -0.9
3,938,755 - BWI76_RS18985 0.62 -2.3
3,938,755 - BWI76_RS18985 0.62 -1.1
3,938,770 - BWI76_RS18985 0.64 -2.1
3,938,798 - BWI76_RS18985 0.68 -2.9
3,938,828 - BWI76_RS18985 0.72 -0.8
3,938,833 - BWI76_RS18985 0.73 -2.6
3,938,833 - BWI76_RS18985 0.73 -0.1
3,938,833 - BWI76_RS18985 0.73 -0.9
3,938,848 - BWI76_RS18985 0.75 -1.8
3,938,848 - BWI76_RS18985 0.75 -1.6
3,938,852 - BWI76_RS18985 0.75 -2.7
3,938,852 - BWI76_RS18985 0.75 -0.7
3,938,869 - BWI76_RS18985 0.78 -2.3
3,938,869 - BWI76_RS18985 0.78 -1.3
3,938,870 - BWI76_RS18985 0.78 -1.3
3,938,870 - BWI76_RS18985 0.78 -1.5
3,938,870 - BWI76_RS18985 0.78 -2.5
3,938,870 - BWI76_RS18985 0.78 -1.9
3,938,874 - BWI76_RS18985 0.78 -1.5
3,938,876 - BWI76_RS18985 0.79 -0.6
3,938,876 - BWI76_RS18985 0.79 -2.0
3,938,876 - BWI76_RS18985 0.79 -2.4
3,938,876 - BWI76_RS18985 0.79 -1.7
3,938,876 - BWI76_RS18985 0.79 -0.4
3,938,923 - BWI76_RS18985 0.85 -1.6
3,938,945 - BWI76_RS18985 0.88 -1.0
3,938,974 - -1.9
3,939,040 - -3.3
3,939,043 - -2.0
3,939,099 - -0.5
3,939,104 - -2.2
3,939,118 - BWI76_RS18990 0.11 -0.6
3,939,120 - BWI76_RS18990 0.11 -0.2
3,939,120 - BWI76_RS18990 0.11 -2.2
3,939,120 - BWI76_RS18990 0.11 -1.6
3,939,192 - BWI76_RS18990 0.21 +1.2
3,939,193 - BWI76_RS18990 0.21 -0.8
3,939,193 - BWI76_RS18990 0.21 -1.6
3,939,199 - BWI76_RS18990 0.21 -0.7
3,939,199 - BWI76_RS18990 0.21 -1.2
3,939,199 - BWI76_RS18990 0.21 -4.2
3,939,199 - BWI76_RS18990 0.21 -0.4
3,939,199 - BWI76_RS18990 0.21 -1.1
3,939,199 - BWI76_RS18990 0.21 -1.2
3,939,199 - BWI76_RS18990 0.21 -1.6
3,939,199 - BWI76_RS18990 0.21 -1.9
3,939,209 - BWI76_RS18990 0.23 +0.5
3,939,266 - BWI76_RS18990 0.30 -1.9
3,939,278 - BWI76_RS18990 0.32 -1.5
3,939,278 - BWI76_RS18990 0.32 -0.8
3,939,278 - BWI76_RS18990 0.32 -0.6
3,939,278 - BWI76_RS18990 0.32 -1.1
3,939,278 - BWI76_RS18990 0.32 +0.8
3,939,278 - BWI76_RS18990 0.32 -2.5
3,939,278 - BWI76_RS18990 0.32 -0.5
3,939,278 - -0.8
3,939,357 - BWI76_RS18990 0.42 -1.8
3,939,358 - BWI76_RS18990 0.42 -2.4
3,939,379 - BWI76_RS18990 0.45 -1.9
3,939,393 - BWI76_RS18990 0.47 -0.4
3,939,394 - BWI76_RS18990 0.47 -1.6
3,939,394 - BWI76_RS18990 0.47 -0.8
3,939,394 - BWI76_RS18990 0.47 -0.4
3,939,394 - BWI76_RS18990 0.47 -2.2
3,939,418 - BWI76_RS18990 0.50 -0.7
3,939,423 - BWI76_RS18990 0.51 -1.1
3,939,460 - BWI76_RS18990 0.55 -0.8
3,939,460 - BWI76_RS18990 0.55 -2.2
3,939,460 - BWI76_RS18990 0.55 -1.5
3,939,460 - BWI76_RS18990 0.55 -1.4
3,939,460 - BWI76_RS18990 0.55 -1.7
3,939,471 - BWI76_RS18990 0.57 -3.7
3,939,488 - BWI76_RS18990 0.59 -1.0
3,939,584 - BWI76_RS18990 0.72 -1.6
3,939,591 - BWI76_RS18990 0.73 -1.5
3,939,594 - BWI76_RS18990 0.73 -3.1
3,939,594 - BWI76_RS18990 0.73 -1.7
3,939,746 - -0.9
3,939,747 - -0.8
3,939,836 + +1.8
3,939,844 - -0.6
3,939,844 - +0.4
3,939,844 - -0.4
3,939,849 - +1.1
3,939,849 - -0.6
3,939,849 - -1.3
3,939,849 - +0.5
3,939,851 - -0.9
3,939,851 - +1.2
3,939,859 - +0.4
3,939,900 - +0.2
3,939,905 - +1.0
3,939,912 + -0.4
3,939,913 - +0.6
3,939,918 - -0.2
3,939,918 - -0.1
3,939,918 - +0.7
3,939,918 - -0.8
3,939,918 - +0.8
3,939,918 - +1.3
3,939,918 - -0.6
3,939,918 - -2.0
3,939,918 - -0.3
3,939,918 - -0.2
3,939,918 - -0.9
3,939,918 - +0.0
3,939,918 - -0.4
3,939,918 - +0.4
3,939,918 - +1.2
3,939,920 - +0.9
3,939,920 - -0.2
3,939,920 - +0.3
3,939,920 - -1.0
3,939,920 - +0.1
3,939,920 - +1.0
3,939,920 - -0.0
3,939,920 - +0.2
3,939,928 - +0.8
3,939,946 - +0.4
3,939,973 + +0.2
3,939,974 - +0.2
3,939,974 - -0.1
3,939,986 - -0.1
3,940,006 + +2.0
3,940,014 - +0.4
3,940,049 - -0.3
3,940,275 - +0.6
3,940,287 + +0.2
3,940,348 + +1.2
3,940,351 - -1.4
3,940,356 - +0.0
3,940,383 + +0.3
3,940,383 + -0.1
3,940,387 - -0.4
3,940,391 - +0.3
3,940,397 - -0.4
3,940,408 + -0.3
3,940,409 + +1.5
3,940,416 - +0.1
3,940,478 + -0.1
3,940,486 - +0.6
3,940,514 + +0.0
3,940,514 + -0.1
3,940,514 + -0.1
3,940,514 + +0.9
3,940,522 - +0.1
3,940,522 - +0.6
3,940,522 - +0.5
3,940,522 - -0.3
3,940,523 - +0.3
3,940,553 + -1.1
3,940,571 + -2.6
3,940,581 + -0.9
3,940,583 + -0.6
3,940,586 + +0.4
3,940,586 + -0.9
3,940,586 + -0.1
3,940,586 + -0.6
3,940,588 + -0.4
3,940,594 - +0.0
3,940,594 - +0.5
3,940,594 - -0.2
3,940,596 - -0.3
3,940,605 + -1.6
3,940,609 + -0.1
3,940,610 + -0.5
3,940,617 - +0.6
3,940,618 - +0.9
3,940,639 + +0.7

Or see this region's nucleotide sequence