Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18980 and BWI76_RS18985 are separated by 13 nucleotides BWI76_RS18985 and BWI76_RS18990 overlap by 1 nucleotides
BWI76_RS18980: BWI76_RS18980 - glycosyl transferase, at 3,936,388 to 3,938,280
_RS18980
BWI76_RS18985: BWI76_RS18985 - LPS O-antigen ABC transporter ATP-binding protein, at 3,938,294 to 3,939,034
_RS18985
BWI76_RS18990: BWI76_RS18990 - ABC transporter permease, at 3,939,034 to 3,939,801
_RS18990
Position (kb)
3939
3940 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3938.168 kb on - strand at 3938.186 kb on - strand at 3938.186 kb on - strand at 3938.188 kb on - strand at 3938.192 kb on + strand at 3938.193 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.200 kb on - strand at 3938.233 kb on - strand at 3938.245 kb on - strand at 3938.250 kb on - strand at 3938.266 kb on - strand at 3938.273 kb on - strand at 3938.408 kb on - strand, within BWI76_RS18985 at 3938.411 kb on - strand, within BWI76_RS18985 at 3938.415 kb on - strand, within BWI76_RS18985 at 3938.425 kb on + strand, within BWI76_RS18985 at 3938.458 kb on - strand, within BWI76_RS18985 at 3938.459 kb on - strand, within BWI76_RS18985 at 3938.459 kb on - strand, within BWI76_RS18985 at 3938.583 kb on - strand, within BWI76_RS18985 at 3938.594 kb on - strand, within BWI76_RS18985 at 3938.619 kb on - strand, within BWI76_RS18985 at 3938.666 kb on - strand, within BWI76_RS18985 at 3938.674 kb on - strand, within BWI76_RS18985 at 3938.755 kb on - strand, within BWI76_RS18985 at 3938.755 kb on - strand, within BWI76_RS18985 at 3938.770 kb on - strand, within BWI76_RS18985 at 3938.798 kb on - strand, within BWI76_RS18985 at 3938.828 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.833 kb on - strand, within BWI76_RS18985 at 3938.848 kb on - strand, within BWI76_RS18985 at 3938.848 kb on - strand, within BWI76_RS18985 at 3938.852 kb on - strand, within BWI76_RS18985 at 3938.852 kb on - strand, within BWI76_RS18985 at 3938.869 kb on - strand, within BWI76_RS18985 at 3938.869 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.870 kb on - strand, within BWI76_RS18985 at 3938.874 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.876 kb on - strand, within BWI76_RS18985 at 3938.923 kb on - strand, within BWI76_RS18985 at 3938.945 kb on - strand, within BWI76_RS18985 at 3938.974 kb on - strand at 3939.040 kb on - strand at 3939.043 kb on - strand at 3939.099 kb on - strand at 3939.104 kb on - strand at 3939.118 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.120 kb on - strand, within BWI76_RS18990 at 3939.192 kb on - strand, within BWI76_RS18990 at 3939.193 kb on - strand, within BWI76_RS18990 at 3939.193 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.199 kb on - strand, within BWI76_RS18990 at 3939.209 kb on - strand, within BWI76_RS18990 at 3939.266 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand, within BWI76_RS18990 at 3939.278 kb on - strand at 3939.357 kb on - strand, within BWI76_RS18990 at 3939.358 kb on - strand, within BWI76_RS18990 at 3939.379 kb on - strand, within BWI76_RS18990 at 3939.393 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.394 kb on - strand, within BWI76_RS18990 at 3939.418 kb on - strand, within BWI76_RS18990 at 3939.423 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.460 kb on - strand, within BWI76_RS18990 at 3939.471 kb on - strand, within BWI76_RS18990 at 3939.488 kb on - strand, within BWI76_RS18990 at 3939.584 kb on - strand, within BWI76_RS18990 at 3939.591 kb on - strand, within BWI76_RS18990 at 3939.594 kb on - strand, within BWI76_RS18990 at 3939.594 kb on - strand, within BWI76_RS18990 at 3939.746 kb on - strand at 3939.747 kb on - strand at 3939.836 kb on + strand at 3939.844 kb on - strand at 3939.844 kb on - strand at 3939.844 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.849 kb on - strand at 3939.851 kb on - strand at 3939.851 kb on - strand at 3939.859 kb on - strand at 3939.900 kb on - strand at 3939.905 kb on - strand at 3939.912 kb on + strand at 3939.913 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.918 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.920 kb on - strand at 3939.928 kb on - strand at 3939.946 kb on - strand at 3939.973 kb on + strand at 3939.974 kb on - strand at 3939.974 kb on - strand at 3939.986 kb on - strand at 3940.006 kb on + strand at 3940.014 kb on - strand at 3940.049 kb on - strand at 3940.275 kb on - strand at 3940.287 kb on + strand at 3940.348 kb on + strand at 3940.351 kb on - strand at 3940.356 kb on - strand at 3940.383 kb on + strand at 3940.383 kb on + strand at 3940.387 kb on - strand at 3940.391 kb on - strand at 3940.397 kb on - strand at 3940.408 kb on + strand at 3940.409 kb on + strand at 3940.416 kb on - strand at 3940.478 kb on + strand at 3940.486 kb on - strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.514 kb on + strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.522 kb on - strand at 3940.523 kb on - strand at 3940.553 kb on + strand at 3940.571 kb on + strand at 3940.581 kb on + strand at 3940.583 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.586 kb on + strand at 3940.588 kb on + strand at 3940.594 kb on - strand at 3940.594 kb on - strand at 3940.594 kb on - strand at 3940.596 kb on - strand at 3940.605 kb on + strand at 3940.609 kb on + strand at 3940.610 kb on + strand at 3940.617 kb on - strand at 3940.618 kb on - strand at 3940.639 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 3,938,168 - -0.1 3,938,186 - -1.1 3,938,186 - -0.5 3,938,188 - -0.6 3,938,192 + +0.1 3,938,193 - -1.0 3,938,200 - -1.4 3,938,200 - -0.1 3,938,200 - -1.2 3,938,200 - -0.1 3,938,233 - -0.9 3,938,245 - -0.2 3,938,250 - -0.4 3,938,266 - -0.7 3,938,273 - -0.1 3,938,408 - BWI76_RS18985 0.15 -0.8 3,938,411 - BWI76_RS18985 0.16 -2.4 3,938,415 - BWI76_RS18985 0.16 -2.0 3,938,425 + BWI76_RS18985 0.18 +0.4 3,938,458 - BWI76_RS18985 0.22 -1.7 3,938,459 - BWI76_RS18985 0.22 -0.7 3,938,459 - BWI76_RS18985 0.22 -0.7 3,938,583 - BWI76_RS18985 0.39 -0.7 3,938,594 - BWI76_RS18985 0.40 -2.0 3,938,619 - BWI76_RS18985 0.44 -2.3 3,938,666 - BWI76_RS18985 0.50 -1.6 3,938,674 - BWI76_RS18985 0.51 -0.9 3,938,755 - BWI76_RS18985 0.62 -2.3 3,938,755 - BWI76_RS18985 0.62 -1.1 3,938,770 - BWI76_RS18985 0.64 -2.1 3,938,798 - BWI76_RS18985 0.68 -2.9 3,938,828 - BWI76_RS18985 0.72 -0.8 3,938,833 - BWI76_RS18985 0.73 -2.6 3,938,833 - BWI76_RS18985 0.73 -0.1 3,938,833 - BWI76_RS18985 0.73 -0.9 3,938,848 - BWI76_RS18985 0.75 -1.8 3,938,848 - BWI76_RS18985 0.75 -1.6 3,938,852 - BWI76_RS18985 0.75 -2.7 3,938,852 - BWI76_RS18985 0.75 -0.7 3,938,869 - BWI76_RS18985 0.78 -2.3 3,938,869 - BWI76_RS18985 0.78 -1.3 3,938,870 - BWI76_RS18985 0.78 -1.3 3,938,870 - BWI76_RS18985 0.78 -1.5 3,938,870 - BWI76_RS18985 0.78 -2.5 3,938,870 - BWI76_RS18985 0.78 -1.9 3,938,874 - BWI76_RS18985 0.78 -1.5 3,938,876 - BWI76_RS18985 0.79 -0.6 3,938,876 - BWI76_RS18985 0.79 -2.0 3,938,876 - BWI76_RS18985 0.79 -2.4 3,938,876 - BWI76_RS18985 0.79 -1.7 3,938,876 - BWI76_RS18985 0.79 -0.4 3,938,923 - BWI76_RS18985 0.85 -1.6 3,938,945 - BWI76_RS18985 0.88 -1.0 3,938,974 - -1.9 3,939,040 - -3.3 3,939,043 - -2.0 3,939,099 - -0.5 3,939,104 - -2.2 3,939,118 - BWI76_RS18990 0.11 -0.6 3,939,120 - BWI76_RS18990 0.11 -0.2 3,939,120 - BWI76_RS18990 0.11 -2.2 3,939,120 - BWI76_RS18990 0.11 -1.6 3,939,192 - BWI76_RS18990 0.21 +1.2 3,939,193 - BWI76_RS18990 0.21 -0.8 3,939,193 - BWI76_RS18990 0.21 -1.6 3,939,199 - BWI76_RS18990 0.21 -0.7 3,939,199 - BWI76_RS18990 0.21 -1.2 3,939,199 - BWI76_RS18990 0.21 -4.2 3,939,199 - BWI76_RS18990 0.21 -0.4 3,939,199 - BWI76_RS18990 0.21 -1.1 3,939,199 - BWI76_RS18990 0.21 -1.2 3,939,199 - BWI76_RS18990 0.21 -1.6 3,939,199 - BWI76_RS18990 0.21 -1.9 3,939,209 - BWI76_RS18990 0.23 +0.5 3,939,266 - BWI76_RS18990 0.30 -1.9 3,939,278 - BWI76_RS18990 0.32 -1.5 3,939,278 - BWI76_RS18990 0.32 -0.8 3,939,278 - BWI76_RS18990 0.32 -0.6 3,939,278 - BWI76_RS18990 0.32 -1.1 3,939,278 - BWI76_RS18990 0.32 +0.8 3,939,278 - BWI76_RS18990 0.32 -2.5 3,939,278 - BWI76_RS18990 0.32 -0.5 3,939,278 - -0.8 3,939,357 - BWI76_RS18990 0.42 -1.8 3,939,358 - BWI76_RS18990 0.42 -2.4 3,939,379 - BWI76_RS18990 0.45 -1.9 3,939,393 - BWI76_RS18990 0.47 -0.4 3,939,394 - BWI76_RS18990 0.47 -1.6 3,939,394 - BWI76_RS18990 0.47 -0.8 3,939,394 - BWI76_RS18990 0.47 -0.4 3,939,394 - BWI76_RS18990 0.47 -2.2 3,939,418 - BWI76_RS18990 0.50 -0.7 3,939,423 - BWI76_RS18990 0.51 -1.1 3,939,460 - BWI76_RS18990 0.55 -0.8 3,939,460 - BWI76_RS18990 0.55 -2.2 3,939,460 - BWI76_RS18990 0.55 -1.5 3,939,460 - BWI76_RS18990 0.55 -1.4 3,939,460 - BWI76_RS18990 0.55 -1.7 3,939,471 - BWI76_RS18990 0.57 -3.7 3,939,488 - BWI76_RS18990 0.59 -1.0 3,939,584 - BWI76_RS18990 0.72 -1.6 3,939,591 - BWI76_RS18990 0.73 -1.5 3,939,594 - BWI76_RS18990 0.73 -3.1 3,939,594 - BWI76_RS18990 0.73 -1.7 3,939,746 - -0.9 3,939,747 - -0.8 3,939,836 + +1.8 3,939,844 - -0.6 3,939,844 - +0.4 3,939,844 - -0.4 3,939,849 - +1.1 3,939,849 - -0.6 3,939,849 - -1.3 3,939,849 - +0.5 3,939,851 - -0.9 3,939,851 - +1.2 3,939,859 - +0.4 3,939,900 - +0.2 3,939,905 - +1.0 3,939,912 + -0.4 3,939,913 - +0.6 3,939,918 - -0.2 3,939,918 - -0.1 3,939,918 - +0.7 3,939,918 - -0.8 3,939,918 - +0.8 3,939,918 - +1.3 3,939,918 - -0.6 3,939,918 - -2.0 3,939,918 - -0.3 3,939,918 - -0.2 3,939,918 - -0.9 3,939,918 - +0.0 3,939,918 - -0.4 3,939,918 - +0.4 3,939,918 - +1.2 3,939,920 - +0.9 3,939,920 - -0.2 3,939,920 - +0.3 3,939,920 - -1.0 3,939,920 - +0.1 3,939,920 - +1.0 3,939,920 - -0.0 3,939,920 - +0.2 3,939,928 - +0.8 3,939,946 - +0.4 3,939,973 + +0.2 3,939,974 - +0.2 3,939,974 - -0.1 3,939,986 - -0.1 3,940,006 + +2.0 3,940,014 - +0.4 3,940,049 - -0.3 3,940,275 - +0.6 3,940,287 + +0.2 3,940,348 + +1.2 3,940,351 - -1.4 3,940,356 - +0.0 3,940,383 + +0.3 3,940,383 + -0.1 3,940,387 - -0.4 3,940,391 - +0.3 3,940,397 - -0.4 3,940,408 + -0.3 3,940,409 + +1.5 3,940,416 - +0.1 3,940,478 + -0.1 3,940,486 - +0.6 3,940,514 + +0.0 3,940,514 + -0.1 3,940,514 + -0.1 3,940,514 + +0.9 3,940,522 - +0.1 3,940,522 - +0.6 3,940,522 - +0.5 3,940,522 - -0.3 3,940,523 - +0.3 3,940,553 + -1.1 3,940,571 + -2.6 3,940,581 + -0.9 3,940,583 + -0.6 3,940,586 + +0.4 3,940,586 + -0.9 3,940,586 + -0.1 3,940,586 + -0.6 3,940,588 + -0.4 3,940,594 - +0.0 3,940,594 - +0.5 3,940,594 - -0.2 3,940,596 - -0.3 3,940,605 + -1.6 3,940,609 + -0.1 3,940,610 + -0.5 3,940,617 - +0.6 3,940,618 - +0.9 3,940,639 + +0.7
Or see this region's nucleotide sequence