Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13230 and BWI76_RS13235 are separated by 66 nucleotides BWI76_RS13235 and BWI76_RS13240 are separated by 279 nucleotides BWI76_RS13240 and BWI76_RS13245 are separated by 318 nucleotides BWI76_RS13245 and BWI76_RS13250 are separated by 225 nucleotides
BWI76_RS13230: BWI76_RS13230 - GGDEF domain-containing protein, at 2,761,118 to 2,762,089
_RS13230
BWI76_RS13235: BWI76_RS13235 - hypothetical protein, at 2,762,156 to 2,762,359
_RS13235
BWI76_RS13240: BWI76_RS13240 - hypothetical protein, at 2,762,639 to 2,762,836
_RS13240
BWI76_RS13245: BWI76_RS13245 - DNA-damage-inducible protein I, at 2,763,155 to 2,763,397
_RS13245
BWI76_RS13250: BWI76_RS13250 - cytochrome b561, at 2,763,623 to 2,764,150
_RS13250
Position (kb) 2762
2763 Strain fitness (log2 ratio) -1
0
1 at 2761.776 kb on - strand, within BWI76_RS13230 at 2762.249 kb on + strand, within BWI76_RS13235 at 2762.757 kb on - strand, within BWI76_RS13240 at 2763.340 kb on + strand, within BWI76_RS13245 at 2763.350 kb on + strand, within BWI76_RS13245 at 2763.465 kb on - strand at 2763.471 kb on - strand at 2763.472 kb on - strand at 2763.518 kb on - strand at 2763.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 2,761,776 - BWI76_RS13230 0.68 +0.6 2,762,249 + BWI76_RS13235 0.46 +0.4 2,762,757 - BWI76_RS13240 0.60 -1.4 2,763,340 + BWI76_RS13245 0.76 -0.0 2,763,350 + BWI76_RS13245 0.80 +1.2 2,763,465 - -0.6 2,763,471 - +0.6 2,763,472 - -0.8 2,763,518 - -0.5 2,763,518 - +0.2
Or see this region's nucleotide sequence