Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06185 and BWI76_RS06190 are separated by 71 nucleotides BWI76_RS06190 and BWI76_RS06195 are separated by 268 nucleotides BWI76_RS06195 and BWI76_RS06200 are separated by 87 nucleotides BWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotides
BWI76_RS06185: BWI76_RS06185 - shikimate kinase II, at 1,298,377 to 1,298,904
_RS06185
BWI76_RS06190: BWI76_RS06190 - hypothetical protein, at 1,298,976 to 1,299,167
_RS06190
BWI76_RS06195: BWI76_RS06195 - hypothetical protein, at 1,299,436 to 1,300,101
_RS06195
BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473
_RS06200
BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430
_RS06205
Position (kb)
1299
1300
1301 Strain fitness (log2 ratio)
-1
0
1
2 at 1298.456 kb on + strand, within BWI76_RS06185 at 1298.464 kb on - strand, within BWI76_RS06185 at 1298.500 kb on - strand, within BWI76_RS06185 at 1298.615 kb on + strand, within BWI76_RS06185 at 1298.623 kb on - strand, within BWI76_RS06185 at 1298.623 kb on - strand, within BWI76_RS06185 at 1298.623 kb on - strand, within BWI76_RS06185 at 1298.623 kb on - strand, within BWI76_RS06185 at 1298.645 kb on - strand, within BWI76_RS06185 at 1298.672 kb on + strand, within BWI76_RS06185 at 1298.705 kb on - strand, within BWI76_RS06185 at 1298.762 kb on + strand, within BWI76_RS06185 at 1298.805 kb on - strand, within BWI76_RS06185 at 1298.898 kb on - strand at 1299.063 kb on - strand, within BWI76_RS06190 at 1299.063 kb on - strand, within BWI76_RS06190 at 1299.063 kb on - strand, within BWI76_RS06190 at 1299.325 kb on - strand at 1299.477 kb on + strand at 1299.630 kb on + strand, within BWI76_RS06195 at 1299.663 kb on - strand, within BWI76_RS06195 at 1299.665 kb on + strand, within BWI76_RS06195 at 1299.717 kb on + strand, within BWI76_RS06195 at 1299.773 kb on + strand, within BWI76_RS06195 at 1299.809 kb on + strand, within BWI76_RS06195 at 1299.809 kb on + strand, within BWI76_RS06195 at 1299.817 kb on - strand, within BWI76_RS06195 at 1299.891 kb on + strand, within BWI76_RS06195 at 1299.902 kb on + strand, within BWI76_RS06195 at 1300.156 kb on - strand at 1300.179 kb on - strand at 1300.250 kb on + strand, within BWI76_RS06200 at 1300.448 kb on + strand at 1300.664 kb on - strand, within BWI76_RS06205 at 1300.989 kb on - strand, within BWI76_RS06205 at 1301.100 kb on - strand, within BWI76_RS06205
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,298,456 + BWI76_RS06185 0.15 +1.4 1,298,464 - BWI76_RS06185 0.16 +0.1 1,298,500 - BWI76_RS06185 0.23 +0.9 1,298,615 + BWI76_RS06185 0.45 -0.6 1,298,623 - BWI76_RS06185 0.47 +0.2 1,298,623 - BWI76_RS06185 0.47 -1.2 1,298,623 - BWI76_RS06185 0.47 -0.6 1,298,623 - BWI76_RS06185 0.47 -0.1 1,298,645 - BWI76_RS06185 0.51 -1.0 1,298,672 + BWI76_RS06185 0.56 -0.2 1,298,705 - BWI76_RS06185 0.62 -1.0 1,298,762 + BWI76_RS06185 0.73 -0.1 1,298,805 - BWI76_RS06185 0.81 -0.6 1,298,898 - -0.7 1,299,063 - BWI76_RS06190 0.45 -0.6 1,299,063 - BWI76_RS06190 0.45 -0.1 1,299,063 - BWI76_RS06190 0.45 +0.4 1,299,325 - -0.1 1,299,477 + -0.2 1,299,630 + BWI76_RS06195 0.29 -0.1 1,299,663 - BWI76_RS06195 0.34 -0.9 1,299,665 + BWI76_RS06195 0.34 -0.3 1,299,717 + BWI76_RS06195 0.42 +1.2 1,299,773 + BWI76_RS06195 0.51 -0.0 1,299,809 + BWI76_RS06195 0.56 -0.3 1,299,809 + BWI76_RS06195 0.56 -0.6 1,299,817 - BWI76_RS06195 0.57 -0.6 1,299,891 + BWI76_RS06195 0.68 -0.5 1,299,902 + BWI76_RS06195 0.70 +0.1 1,300,156 - +0.5 1,300,179 - +0.5 1,300,250 + BWI76_RS06200 0.21 +0.4 1,300,448 + -0.1 1,300,664 - BWI76_RS06205 0.16 +1.3 1,300,989 - BWI76_RS06205 0.52 +2.3 1,301,100 - BWI76_RS06205 0.64 +1.8
Or see this region's nucleotide sequence