Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03680 and BWI76_RS03685 are separated by 63 nucleotides BWI76_RS03685 and BWI76_RS03690 are separated by 231 nucleotides
BWI76_RS03680: BWI76_RS03680 - DNA methyltransferase, at 763,237 to 764,856
_RS03680
BWI76_RS03685: BWI76_RS03685 - restriction endonuclease, at 764,920 to 766,086
_RS03685
BWI76_RS03690: BWI76_RS03690 - transcriptional regulator, GntR family/aminotransferase family protein, at 766,318 to 767,730
_RS03690
Position (kb) 764
765
766
767 Strain fitness (log2 ratio) -1
0
1
2 at 763.943 kb on + strand, within BWI76_RS03680 at 763.953 kb on + strand, within BWI76_RS03680 at 763.953 kb on + strand, within BWI76_RS03680 at 764.001 kb on + strand, within BWI76_RS03680 at 764.001 kb on + strand, within BWI76_RS03680 at 764.033 kb on - strand, within BWI76_RS03680 at 764.109 kb on + strand, within BWI76_RS03680 at 764.269 kb on - strand, within BWI76_RS03680 at 764.421 kb on + strand, within BWI76_RS03680 at 764.513 kb on - strand, within BWI76_RS03680 at 764.518 kb on - strand, within BWI76_RS03680 at 764.520 kb on + strand, within BWI76_RS03680 at 764.542 kb on + strand, within BWI76_RS03680 at 764.734 kb on + strand at 764.742 kb on - strand at 764.804 kb on - strand at 764.804 kb on - strand at 764.936 kb on + strand at 764.975 kb on + strand at 764.983 kb on - strand at 765.107 kb on - strand at 765.108 kb on + strand, within BWI76_RS03685 at 765.139 kb on + strand, within BWI76_RS03685 at 765.147 kb on - strand, within BWI76_RS03685 at 765.202 kb on - strand, within BWI76_RS03685 at 765.202 kb on - strand, within BWI76_RS03685 at 765.242 kb on + strand, within BWI76_RS03685 at 765.260 kb on - strand, within BWI76_RS03685 at 765.294 kb on + strand, within BWI76_RS03685 at 765.316 kb on - strand, within BWI76_RS03685 at 765.533 kb on + strand, within BWI76_RS03685 at 765.627 kb on + strand, within BWI76_RS03685 at 765.635 kb on - strand, within BWI76_RS03685 at 765.684 kb on + strand, within BWI76_RS03685 at 765.703 kb on + strand, within BWI76_RS03685 at 765.738 kb on - strand, within BWI76_RS03685 at 765.829 kb on - strand, within BWI76_RS03685 at 765.842 kb on + strand, within BWI76_RS03685 at 765.842 kb on + strand, within BWI76_RS03685 at 765.943 kb on + strand, within BWI76_RS03685 at 765.946 kb on - strand, within BWI76_RS03685 at 765.971 kb on - strand at 766.019 kb on + strand at 766.019 kb on + strand at 766.118 kb on - strand at 766.118 kb on - strand at 766.164 kb on - strand at 766.197 kb on - strand at 766.280 kb on - strand at 766.308 kb on + strand at 766.308 kb on + strand at 766.316 kb on + strand at 766.316 kb on - strand at 766.323 kb on - strand at 766.363 kb on - strand at 766.492 kb on + strand, within BWI76_RS03690 at 766.535 kb on - strand, within BWI76_RS03690 at 766.599 kb on - strand, within BWI76_RS03690 at 766.600 kb on - strand, within BWI76_RS03690 at 766.656 kb on - strand, within BWI76_RS03690 at 766.656 kb on - strand, within BWI76_RS03690 at 766.805 kb on + strand, within BWI76_RS03690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 763,943 + BWI76_RS03680 0.44 +1.7 763,953 + BWI76_RS03680 0.44 +0.4 763,953 + BWI76_RS03680 0.44 +0.2 764,001 + BWI76_RS03680 0.47 -0.3 764,001 + BWI76_RS03680 0.47 +0.1 764,033 - BWI76_RS03680 0.49 -0.2 764,109 + BWI76_RS03680 0.54 +0.3 764,269 - BWI76_RS03680 0.64 -0.1 764,421 + BWI76_RS03680 0.73 -0.9 764,513 - BWI76_RS03680 0.79 +0.5 764,518 - BWI76_RS03680 0.79 -1.0 764,520 + BWI76_RS03680 0.79 -0.5 764,542 + BWI76_RS03680 0.81 -0.1 764,734 + -1.7 764,742 - +0.1 764,804 - +0.8 764,804 - -1.1 764,936 + -0.1 764,975 + +1.3 764,983 - +0.4 765,107 - +1.3 765,108 + BWI76_RS03685 0.16 -0.9 765,139 + BWI76_RS03685 0.19 +0.4 765,147 - BWI76_RS03685 0.19 -1.0 765,202 - BWI76_RS03685 0.24 +0.1 765,202 - BWI76_RS03685 0.24 -1.3 765,242 + BWI76_RS03685 0.28 -0.3 765,260 - BWI76_RS03685 0.29 -0.7 765,294 + BWI76_RS03685 0.32 -0.7 765,316 - BWI76_RS03685 0.34 +0.7 765,533 + BWI76_RS03685 0.53 -0.4 765,627 + BWI76_RS03685 0.61 +0.1 765,635 - BWI76_RS03685 0.61 +0.7 765,684 + BWI76_RS03685 0.65 -0.0 765,703 + BWI76_RS03685 0.67 -0.3 765,738 - BWI76_RS03685 0.70 -0.7 765,829 - BWI76_RS03685 0.78 +0.5 765,842 + BWI76_RS03685 0.79 -0.8 765,842 + BWI76_RS03685 0.79 +0.1 765,943 + BWI76_RS03685 0.88 -1.4 765,946 - BWI76_RS03685 0.88 -1.5 765,971 - +1.0 766,019 + +0.5 766,019 + -0.5 766,118 - -1.6 766,118 - -0.0 766,164 - -1.3 766,197 - +2.3 766,280 - -0.9 766,308 + -1.5 766,308 + -0.2 766,316 + +0.6 766,316 - -1.0 766,323 - -0.1 766,363 - +0.6 766,492 + BWI76_RS03690 0.12 +0.5 766,535 - BWI76_RS03690 0.15 +2.3 766,599 - BWI76_RS03690 0.20 -0.3 766,600 - BWI76_RS03690 0.20 +0.6 766,656 - BWI76_RS03690 0.24 +0.1 766,656 - BWI76_RS03690 0.24 -0.1 766,805 + BWI76_RS03690 0.34 +1.8
Or see this region's nucleotide sequence