Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03365

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03360 and BWI76_RS03365 are separated by 311 nucleotidesBWI76_RS03365 and BWI76_RS03370 overlap by 4 nucleotides BWI76_RS03360: BWI76_RS03360 - IS3 family transposase, at 692,342 to 693,549 _RS03360 BWI76_RS03365: BWI76_RS03365 - N-6 DNA methylase, at 693,861 to 694,754 _RS03365 BWI76_RS03370: BWI76_RS03370 - type I restriction-modification system subunit S, at 694,751 to 696,202 _RS03370 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2 3at 693.026 kb on + strand, within BWI76_RS03360at 693.098 kb on + strand, within BWI76_RS03360at 693.165 kb on - strandat 693.167 kb on - strand, within BWI76_RS03360at 693.173 kb on + strand, within BWI76_RS03360at 693.191 kb on + strand, within BWI76_RS03360at 693.249 kb on - strand, within BWI76_RS03360at 693.323 kb on + strand, within BWI76_RS03360at 693.452 kb on - strandat 693.473 kb on - strandat 693.476 kb on - strandat 693.488 kb on - strandat 693.506 kb on + strandat 693.514 kb on - strandat 693.514 kb on - strandat 693.522 kb on + strandat 693.522 kb on + strandat 693.566 kb on + strandat 693.568 kb on - strandat 693.579 kb on + strandat 693.615 kb on + strandat 693.623 kb on - strandat 693.680 kb on - strandat 693.682 kb on + strandat 693.690 kb on - strandat 693.706 kb on + strandat 693.706 kb on + strandat 693.706 kb on + strandat 693.714 kb on - strandat 693.714 kb on - strandat 693.714 kb on - strandat 693.804 kb on + strandat 693.834 kb on + strandat 693.887 kb on - strandat 693.888 kb on - strandat 693.913 kb on - strandat 693.934 kb on - strandat 693.988 kb on + strand, within BWI76_RS03365at 693.996 kb on - strand, within BWI76_RS03365at 694.002 kb on + strand, within BWI76_RS03365at 694.002 kb on + strand, within BWI76_RS03365at 694.002 kb on + strand, within BWI76_RS03365at 694.010 kb on - strand, within BWI76_RS03365at 694.010 kb on - strand, within BWI76_RS03365at 694.021 kb on + strand, within BWI76_RS03365at 694.029 kb on - strand, within BWI76_RS03365at 694.061 kb on + strand, within BWI76_RS03365at 694.061 kb on + strand, within BWI76_RS03365at 694.069 kb on - strand, within BWI76_RS03365at 694.109 kb on + strand, within BWI76_RS03365at 694.122 kb on - strand, within BWI76_RS03365at 694.122 kb on - strand, within BWI76_RS03365at 694.126 kb on + strand, within BWI76_RS03365at 694.126 kb on + strand, within BWI76_RS03365at 694.134 kb on - strand, within BWI76_RS03365at 694.134 kb on - strand, within BWI76_RS03365at 694.134 kb on - strand, within BWI76_RS03365at 694.134 kb on - strand, within BWI76_RS03365at 694.134 kb on - strand, within BWI76_RS03365at 694.137 kb on - strand, within BWI76_RS03365at 694.138 kb on + strand, within BWI76_RS03365at 694.146 kb on - strand, within BWI76_RS03365at 694.156 kb on + strand, within BWI76_RS03365at 694.164 kb on - strand, within BWI76_RS03365at 694.164 kb on - strand, within BWI76_RS03365at 694.164 kb on - strand, within BWI76_RS03365at 694.229 kb on + strand, within BWI76_RS03365at 694.266 kb on + strand, within BWI76_RS03365at 694.292 kb on + strand, within BWI76_RS03365at 694.294 kb on + strand, within BWI76_RS03365at 694.317 kb on - strand, within BWI76_RS03365at 694.321 kb on + strand, within BWI76_RS03365at 694.338 kb on - strandat 694.387 kb on + strand, within BWI76_RS03365at 694.389 kb on + strand, within BWI76_RS03365at 694.389 kb on + strand, within BWI76_RS03365at 694.397 kb on - strand, within BWI76_RS03365at 694.397 kb on - strand, within BWI76_RS03365at 694.397 kb on - strand, within BWI76_RS03365at 694.410 kb on - strand, within BWI76_RS03365at 694.474 kb on + strand, within BWI76_RS03365at 694.482 kb on - strand, within BWI76_RS03365at 694.495 kb on - strandat 694.509 kb on + strand, within BWI76_RS03365at 694.509 kb on + strand, within BWI76_RS03365at 694.515 kb on + strand, within BWI76_RS03365at 694.568 kb on + strand, within BWI76_RS03365at 694.571 kb on + strand, within BWI76_RS03365at 694.572 kb on + strand, within BWI76_RS03365at 694.590 kb on + strand, within BWI76_RS03365at 694.614 kb on + strand, within BWI76_RS03365at 694.614 kb on + strand, within BWI76_RS03365at 694.614 kb on + strand, within BWI76_RS03365at 694.624 kb on + strand, within BWI76_RS03365at 694.624 kb on + strand, within BWI76_RS03365at 694.632 kb on - strand, within BWI76_RS03365at 694.632 kb on - strand, within BWI76_RS03365at 694.644 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.649 kb on + strand, within BWI76_RS03365at 694.650 kb on + strand, within BWI76_RS03365at 694.657 kb on - strand, within BWI76_RS03365at 694.658 kb on - strand, within BWI76_RS03365at 694.659 kb on + strand, within BWI76_RS03365at 694.660 kb on + strand, within BWI76_RS03365at 694.670 kb on + strandat 694.678 kb on - strandat 694.682 kb on + strandat 694.682 kb on + strandat 694.682 kb on + strandat 694.682 kb on + strandat 694.690 kb on - strandat 694.709 kb on + strandat 694.709 kb on + strandat 694.717 kb on - strandat 694.724 kb on + strandat 694.731 kb on + strandat 694.741 kb on + strandat 694.743 kb on + strandat 694.749 kb on - strandat 694.749 kb on - strandat 694.751 kb on - strandat 694.821 kb on - strandat 694.833 kb on + strandat 694.871 kb on + strandat 694.893 kb on + strandat 694.893 kb on + strandat 694.893 kb on + strandat 694.893 kb on + strandat 694.895 kb on + strandat 694.903 kb on - strandat 694.905 kb on + strand, within BWI76_RS03370at 694.905 kb on + strand, within BWI76_RS03370at 694.905 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.917 kb on + strand, within BWI76_RS03370at 694.923 kb on + strand, within BWI76_RS03370at 694.925 kb on - strand, within BWI76_RS03370at 694.931 kb on - strand, within BWI76_RS03370at 694.963 kb on + strand, within BWI76_RS03370at 695.008 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strandat 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.029 kb on + strand, within BWI76_RS03370at 695.037 kb on - strand, within BWI76_RS03370at 695.037 kb on - strand, within BWI76_RS03370at 695.037 kb on - strand, within BWI76_RS03370at 695.037 kb on - strand, within BWI76_RS03370at 695.037 kb on - strand, within BWI76_RS03370at 695.052 kb on - strand, within BWI76_RS03370at 695.139 kb on + strand, within BWI76_RS03370at 695.144 kb on + strand, within BWI76_RS03370at 695.147 kb on - strand, within BWI76_RS03370at 695.154 kb on + strand, within BWI76_RS03370at 695.236 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.321 kb on + strand, within BWI76_RS03370at 695.327 kb on - strand, within BWI76_RS03370at 695.329 kb on - strandat 695.347 kb on + strandat 695.354 kb on + strand, within BWI76_RS03370at 695.355 kb on - strand, within BWI76_RS03370at 695.355 kb on - strand, within BWI76_RS03370at 695.361 kb on + strand, within BWI76_RS03370at 695.407 kb on - strand, within BWI76_RS03370at 695.409 kb on - strand, within BWI76_RS03370at 695.412 kb on + strand, within BWI76_RS03370at 695.412 kb on + strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.420 kb on - strand, within BWI76_RS03370at 695.432 kb on - strand, within BWI76_RS03370at 695.442 kb on - strand, within BWI76_RS03370at 695.447 kb on - strand, within BWI76_RS03370at 695.449 kb on + strand, within BWI76_RS03370at 695.450 kb on + strand, within BWI76_RS03370at 695.479 kb on - strand, within BWI76_RS03370at 695.499 kb on + strand, within BWI76_RS03370at 695.511 kb on - strand, within BWI76_RS03370at 695.539 kb on - strand, within BWI76_RS03370at 695.593 kb on - strand, within BWI76_RS03370at 695.679 kb on + strand, within BWI76_RS03370at 695.734 kb on + strand, within BWI76_RS03370

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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693,026 + BWI76_RS03360 0.57 -0.4
693,098 + BWI76_RS03360 0.63 -0.9
693,165 - -0.3
693,167 - BWI76_RS03360 0.68 -0.0
693,173 + BWI76_RS03360 0.69 -0.4
693,191 + BWI76_RS03360 0.70 -0.5
693,249 - BWI76_RS03360 0.75 -0.1
693,323 + BWI76_RS03360 0.81 +0.0
693,452 - +0.4
693,473 - +0.3
693,476 - -0.0
693,488 - -0.8
693,506 + -0.8
693,514 - -0.2
693,514 - +0.5
693,522 + +0.4
693,522 + +0.7
693,566 + +1.1
693,568 - +1.3
693,579 + +0.8
693,615 + +0.2
693,623 - +0.7
693,680 - +0.8
693,682 + +1.0
693,690 - +0.7
693,706 + +0.1
693,706 + -0.1
693,706 + -0.1
693,714 - +0.3
693,714 - -0.6
693,714 - +0.3
693,804 + -1.7
693,834 + -1.3
693,887 - -0.7
693,888 - -0.7
693,913 - -0.1
693,934 - -1.5
693,988 + BWI76_RS03365 0.14 +1.7
693,996 - BWI76_RS03365 0.15 +1.4
694,002 + BWI76_RS03365 0.16 +0.4
694,002 + BWI76_RS03365 0.16 -0.3
694,002 + BWI76_RS03365 0.16 -0.3
694,010 - BWI76_RS03365 0.17 -0.5
694,010 - BWI76_RS03365 0.17 -0.2
694,021 + BWI76_RS03365 0.18 -0.1
694,029 - BWI76_RS03365 0.19 +0.8
694,061 + BWI76_RS03365 0.22 +0.8
694,061 + BWI76_RS03365 0.22 +0.2
694,069 - BWI76_RS03365 0.23 +0.2
694,109 + BWI76_RS03365 0.28 +0.1
694,122 - BWI76_RS03365 0.29 -0.3
694,122 - BWI76_RS03365 0.29 +0.5
694,126 + BWI76_RS03365 0.30 +0.3
694,126 + BWI76_RS03365 0.30 +0.6
694,134 - BWI76_RS03365 0.31 -1.0
694,134 - BWI76_RS03365 0.31 +1.1
694,134 - BWI76_RS03365 0.31 +0.6
694,134 - BWI76_RS03365 0.31 +0.4
694,134 - BWI76_RS03365 0.31 +0.3
694,137 - BWI76_RS03365 0.31 +1.8
694,138 + BWI76_RS03365 0.31 +0.1
694,146 - BWI76_RS03365 0.32 -0.2
694,156 + BWI76_RS03365 0.33 -0.2
694,164 - BWI76_RS03365 0.34 -0.5
694,164 - BWI76_RS03365 0.34 -1.0
694,164 - BWI76_RS03365 0.34 +0.6
694,229 + BWI76_RS03365 0.41 -0.2
694,266 + BWI76_RS03365 0.45 -0.5
694,292 + BWI76_RS03365 0.48 +0.4
694,294 + BWI76_RS03365 0.48 +0.5
694,317 - BWI76_RS03365 0.51 -0.1
694,321 + BWI76_RS03365 0.51 -0.2
694,338 - +0.3
694,387 + BWI76_RS03365 0.59 +0.4
694,389 + BWI76_RS03365 0.59 +1.0
694,389 + BWI76_RS03365 0.59 -2.2
694,397 - BWI76_RS03365 0.60 -0.3
694,397 - BWI76_RS03365 0.60 -0.6
694,397 - BWI76_RS03365 0.60 +1.3
694,410 - BWI76_RS03365 0.61 +0.4
694,474 + BWI76_RS03365 0.69 -0.3
694,482 - BWI76_RS03365 0.69 +0.5
694,495 - +0.3
694,509 + BWI76_RS03365 0.72 +1.1
694,509 + BWI76_RS03365 0.72 -0.9
694,515 + BWI76_RS03365 0.73 +0.2
694,568 + BWI76_RS03365 0.79 +0.1
694,571 + BWI76_RS03365 0.79 -0.2
694,572 + BWI76_RS03365 0.80 +0.3
694,590 + BWI76_RS03365 0.82 -0.6
694,614 + BWI76_RS03365 0.84 -0.5
694,614 + BWI76_RS03365 0.84 +3.6
694,614 + BWI76_RS03365 0.84 +1.3
694,624 + BWI76_RS03365 0.85 +0.2
694,624 + BWI76_RS03365 0.85 +0.3
694,632 - BWI76_RS03365 0.86 +0.1
694,632 - BWI76_RS03365 0.86 -0.4
694,644 + BWI76_RS03365 0.88 +1.4
694,649 + BWI76_RS03365 0.88 +1.3
694,649 + BWI76_RS03365 0.88 +1.8
694,649 + BWI76_RS03365 0.88 +0.1
694,649 + BWI76_RS03365 0.88 -0.3
694,649 + BWI76_RS03365 0.88 +0.3
694,649 + BWI76_RS03365 0.88 +1.2
694,649 + BWI76_RS03365 0.88 +1.0
694,649 + BWI76_RS03365 0.88 +2.2
694,649 + BWI76_RS03365 0.88 -0.9
694,650 + BWI76_RS03365 0.88 -0.1
694,657 - BWI76_RS03365 0.89 -0.2
694,658 - BWI76_RS03365 0.89 -0.2
694,659 + BWI76_RS03365 0.89 +0.4
694,660 + BWI76_RS03365 0.89 -1.3
694,670 + -0.6
694,678 - -0.1
694,682 + +1.3
694,682 + -2.6
694,682 + -0.4
694,682 + -1.0
694,690 - -1.2
694,709 + -1.4
694,709 + +0.2
694,717 - +0.5
694,724 + +0.8
694,731 + -0.1
694,741 + +0.1
694,743 + +0.3
694,749 - +1.0
694,749 - +0.5
694,751 - +2.6
694,821 - +0.2
694,833 + -0.1
694,871 + +0.8
694,893 + -0.1
694,893 + -0.7
694,893 + +0.2
694,893 + +0.4
694,895 + +0.6
694,903 - +1.9
694,905 + BWI76_RS03370 0.11 +0.7
694,905 + BWI76_RS03370 0.11 +0.1
694,905 + BWI76_RS03370 0.11 -1.0
694,917 + BWI76_RS03370 0.11 -0.5
694,917 + BWI76_RS03370 0.11 -0.1
694,917 + BWI76_RS03370 0.11 +0.5
694,917 + BWI76_RS03370 0.11 +0.3
694,917 + BWI76_RS03370 0.11 +1.7
694,917 + BWI76_RS03370 0.11 +0.9
694,917 + BWI76_RS03370 0.11 -0.7
694,923 + BWI76_RS03370 0.12 +0.1
694,925 - BWI76_RS03370 0.12 +0.1
694,931 - BWI76_RS03370 0.12 -0.5
694,963 + BWI76_RS03370 0.15 +0.7
695,008 + BWI76_RS03370 0.18 -1.4
695,029 + BWI76_RS03370 0.19 +2.3
695,029 + BWI76_RS03370 0.19 +0.1
695,029 + -0.3
695,029 + BWI76_RS03370 0.19 -0.3
695,029 + BWI76_RS03370 0.19 +0.3
695,029 + BWI76_RS03370 0.19 -0.5
695,029 + BWI76_RS03370 0.19 -2.2
695,029 + BWI76_RS03370 0.19 +0.3
695,029 + BWI76_RS03370 0.19 +0.3
695,037 - BWI76_RS03370 0.20 +0.2
695,037 - BWI76_RS03370 0.20 -0.3
695,037 - BWI76_RS03370 0.20 +0.4
695,037 - BWI76_RS03370 0.20 -1.6
695,037 - BWI76_RS03370 0.20 +2.7
695,052 - BWI76_RS03370 0.21 -0.4
695,139 + BWI76_RS03370 0.27 +1.3
695,144 + BWI76_RS03370 0.27 +0.8
695,147 - BWI76_RS03370 0.27 +1.3
695,154 + BWI76_RS03370 0.28 -0.3
695,236 + BWI76_RS03370 0.33 +0.6
695,321 + BWI76_RS03370 0.39 -1.0
695,321 + BWI76_RS03370 0.39 +0.8
695,321 + BWI76_RS03370 0.39 -1.7
695,321 + BWI76_RS03370 0.39 +0.3
695,321 + BWI76_RS03370 0.39 -0.2
695,321 + BWI76_RS03370 0.39 -0.0
695,321 + BWI76_RS03370 0.39 +0.9
695,321 + BWI76_RS03370 0.39 -0.5
695,321 + BWI76_RS03370 0.39 -0.9
695,321 + BWI76_RS03370 0.39 +0.1
695,321 + BWI76_RS03370 0.39 -0.0
695,321 + BWI76_RS03370 0.39 +0.3
695,321 + BWI76_RS03370 0.39 +0.0
695,321 + BWI76_RS03370 0.39 -0.2
695,321 + BWI76_RS03370 0.39 +0.5
695,321 + BWI76_RS03370 0.39 +0.2
695,321 + BWI76_RS03370 0.39 -0.2
695,321 + BWI76_RS03370 0.39 +0.3
695,321 + BWI76_RS03370 0.39 +0.9
695,321 + BWI76_RS03370 0.39 -1.1
695,321 + BWI76_RS03370 0.39 -0.5
695,321 + BWI76_RS03370 0.39 -0.2
695,321 + BWI76_RS03370 0.39 -0.0
695,321 + BWI76_RS03370 0.39 -0.3
695,321 + BWI76_RS03370 0.39 +0.3
695,327 - BWI76_RS03370 0.40 -0.9
695,329 - +2.6
695,347 + +2.3
695,354 + BWI76_RS03370 0.42 -0.3
695,355 - BWI76_RS03370 0.42 +1.4
695,355 - BWI76_RS03370 0.42 -0.1
695,361 + BWI76_RS03370 0.42 +1.3
695,407 - BWI76_RS03370 0.45 -0.6
695,409 - BWI76_RS03370 0.45 +0.4
695,412 + BWI76_RS03370 0.46 -0.3
695,412 + BWI76_RS03370 0.46 -0.5
695,420 - BWI76_RS03370 0.46 +0.1
695,420 - BWI76_RS03370 0.46 -0.3
695,420 - BWI76_RS03370 0.46 +1.3
695,420 - BWI76_RS03370 0.46 -1.3
695,420 - BWI76_RS03370 0.46 +0.3
695,420 - BWI76_RS03370 0.46 +0.5
695,432 - BWI76_RS03370 0.47 -0.6
695,442 - BWI76_RS03370 0.48 +0.9
695,447 - BWI76_RS03370 0.48 -0.6
695,449 + BWI76_RS03370 0.48 +0.6
695,450 + BWI76_RS03370 0.48 -1.1
695,479 - BWI76_RS03370 0.50 +0.9
695,499 + BWI76_RS03370 0.52 +1.5
695,511 - BWI76_RS03370 0.52 +0.7
695,539 - BWI76_RS03370 0.54 +1.5
695,593 - BWI76_RS03370 0.58 -0.6
695,679 + BWI76_RS03370 0.64 +0.7
695,734 + BWI76_RS03370 0.68 +0.9

Or see this region's nucleotide sequence