Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_29110 and AO353_29115 are separated by 55 nucleotides AO353_29115 and AO353_29120 are separated by 165 nucleotides AO353_29120 and AO353_29125 overlap by 4 nucleotides
AO353_29110: AO353_29110 - FAD-dependent oxidoreductase, at 6,325,090 to 6,326,400
_29110
AO353_29115: AO353_29115 - enamine deaminase RidA, at 6,326,456 to 6,326,872
_29115
AO353_29120: AO353_29120 - fimbrial assembly protein FimA, at 6,327,038 to 6,327,715
_29120
AO353_29125: AO353_29125 - acetylornithine deacetylase, at 6,327,712 to 6,328,860
_29125
Position (kb)
6326
6327 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6325.649 kb on + strand, within AO353_29110 at 6325.649 kb on + strand, within AO353_29110 at 6325.650 kb on - strand, within AO353_29110 at 6325.650 kb on - strand, within AO353_29110 at 6325.650 kb on - strand, within AO353_29110 at 6325.672 kb on + strand, within AO353_29110 at 6325.672 kb on + strand, within AO353_29110 at 6325.672 kb on + strand, within AO353_29110 at 6325.672 kb on + strand, within AO353_29110 at 6325.673 kb on - strand, within AO353_29110 at 6325.673 kb on - strand, within AO353_29110 at 6325.805 kb on + strand, within AO353_29110 at 6325.827 kb on + strand, within AO353_29110 at 6325.827 kb on + strand, within AO353_29110 at 6325.828 kb on - strand, within AO353_29110 at 6325.828 kb on - strand, within AO353_29110 at 6325.954 kb on + strand, within AO353_29110 at 6325.954 kb on + strand, within AO353_29110 at 6325.954 kb on + strand, within AO353_29110 at 6325.954 kb on + strand, within AO353_29110 at 6325.954 kb on + strand, within AO353_29110 at 6325.955 kb on - strand, within AO353_29110 at 6325.955 kb on - strand, within AO353_29110 at 6325.955 kb on - strand, within AO353_29110 at 6325.955 kb on - strand, within AO353_29110 at 6325.955 kb on - strand, within AO353_29110 at 6325.984 kb on + strand, within AO353_29110 at 6325.984 kb on + strand, within AO353_29110 at 6325.984 kb on + strand, within AO353_29110 at 6326.034 kb on + strand, within AO353_29110 at 6326.034 kb on + strand, within AO353_29110 at 6326.035 kb on - strand, within AO353_29110 at 6326.035 kb on - strand, within AO353_29110 at 6326.035 kb on - strand, within AO353_29110 at 6326.138 kb on - strand, within AO353_29110 at 6326.199 kb on - strand, within AO353_29110 at 6326.218 kb on + strand, within AO353_29110 at 6326.218 kb on + strand, within AO353_29110 at 6326.219 kb on - strand, within AO353_29110 at 6326.219 kb on - strand, within AO353_29110 at 6326.219 kb on - strand, within AO353_29110 at 6326.219 kb on - strand, within AO353_29110 at 6326.263 kb on - strand, within AO353_29110 at 6326.263 kb on - strand, within AO353_29110 at 6326.290 kb on + strand at 6326.290 kb on + strand at 6326.290 kb on + strand at 6326.291 kb on - strand at 6326.291 kb on - strand at 6326.291 kb on - strand at 6326.379 kb on + strand at 6326.379 kb on + strand at 6326.379 kb on + strand at 6326.564 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.565 kb on + strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.566 kb on - strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.567 kb on + strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.568 kb on - strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.751 kb on - strand, within AO353_29115 at 6326.881 kb on - strand at 6326.916 kb on + strand at 6326.916 kb on + strand at 6326.917 kb on - strand at 6327.267 kb on - strand, within AO353_29120 at 6327.418 kb on - strand, within AO353_29120 at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.805 kb on + strand at 6327.805 kb on + strand at 6327.806 kb on - strand at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 6,325,649 + AO353_29110 0.43 -1.6 6,325,649 + AO353_29110 0.43 -0.9 6,325,650 - AO353_29110 0.43 +1.7 6,325,650 - AO353_29110 0.43 -0.2 6,325,650 - AO353_29110 0.43 -0.1 6,325,672 + AO353_29110 0.44 +0.3 6,325,672 + AO353_29110 0.44 -0.3 6,325,672 + AO353_29110 0.44 -0.3 6,325,672 + AO353_29110 0.44 -1.0 6,325,673 - AO353_29110 0.44 -1.8 6,325,673 - AO353_29110 0.44 +0.6 6,325,805 + AO353_29110 0.55 -1.6 6,325,827 + AO353_29110 0.56 -1.9 6,325,827 + AO353_29110 0.56 +0.4 6,325,828 - AO353_29110 0.56 -1.9 6,325,828 - AO353_29110 0.56 -0.8 6,325,954 + AO353_29110 0.66 -2.6 6,325,954 + AO353_29110 0.66 -1.1 6,325,954 + AO353_29110 0.66 -0.5 6,325,954 + AO353_29110 0.66 -0.9 6,325,954 + AO353_29110 0.66 -0.6 6,325,955 - AO353_29110 0.66 -0.7 6,325,955 - AO353_29110 0.66 -0.0 6,325,955 - AO353_29110 0.66 -0.5 6,325,955 - AO353_29110 0.66 -0.3 6,325,955 - AO353_29110 0.66 -0.1 6,325,984 + AO353_29110 0.68 -0.3 6,325,984 + AO353_29110 0.68 +1.5 6,325,984 + AO353_29110 0.68 +0.5 6,326,034 + AO353_29110 0.72 -1.8 6,326,034 + AO353_29110 0.72 -2.7 6,326,035 - AO353_29110 0.72 -0.0 6,326,035 - AO353_29110 0.72 +0.1 6,326,035 - AO353_29110 0.72 +1.9 6,326,138 - AO353_29110 0.80 -0.9 6,326,199 - AO353_29110 0.85 -1.6 6,326,218 + AO353_29110 0.86 +1.0 6,326,218 + AO353_29110 0.86 -0.3 6,326,219 - AO353_29110 0.86 -1.3 6,326,219 - AO353_29110 0.86 +1.5 6,326,219 - AO353_29110 0.86 +0.1 6,326,219 - AO353_29110 0.86 +0.5 6,326,263 - AO353_29110 0.89 +0.0 6,326,263 - AO353_29110 0.89 +0.5 6,326,290 + -0.3 6,326,290 + +0.7 6,326,290 + +0.4 6,326,291 - +0.1 6,326,291 - -1.3 6,326,291 - -0.4 6,326,379 + -2.7 6,326,379 + -1.9 6,326,379 + +0.2 6,326,564 + AO353_29115 0.26 +0.5 6,326,565 + AO353_29115 0.26 +0.2 6,326,565 + AO353_29115 0.26 -1.9 6,326,565 + AO353_29115 0.26 -1.9 6,326,565 + AO353_29115 0.26 +1.8 6,326,565 + AO353_29115 0.26 -1.3 6,326,565 + AO353_29115 0.26 -0.9 6,326,565 + AO353_29115 0.26 -0.7 6,326,565 + AO353_29115 0.26 +0.9 6,326,565 + AO353_29115 0.26 +0.9 6,326,565 + AO353_29115 0.26 +1.0 6,326,565 + AO353_29115 0.26 +0.8 6,326,565 + AO353_29115 0.26 +0.7 6,326,565 + AO353_29115 0.26 -0.9 6,326,566 - AO353_29115 0.26 -2.1 6,326,566 - AO353_29115 0.26 -0.3 6,326,566 - AO353_29115 0.26 -0.1 6,326,566 - AO353_29115 0.26 +0.7 6,326,566 - AO353_29115 0.26 +0.1 6,326,566 - AO353_29115 0.26 -1.3 6,326,566 - AO353_29115 0.26 -1.6 6,326,566 - AO353_29115 0.26 -1.6 6,326,566 - AO353_29115 0.26 +0.6 6,326,566 - AO353_29115 0.26 -0.5 6,326,566 - AO353_29115 0.26 -0.9 6,326,566 - AO353_29115 0.26 +1.7 6,326,567 + AO353_29115 0.27 -0.1 6,326,567 + AO353_29115 0.27 +0.5 6,326,567 + AO353_29115 0.27 -0.0 6,326,567 + AO353_29115 0.27 -0.5 6,326,567 + AO353_29115 0.27 -1.3 6,326,567 + AO353_29115 0.27 +0.1 6,326,567 + AO353_29115 0.27 -1.3 6,326,567 + AO353_29115 0.27 +0.2 6,326,568 - AO353_29115 0.27 +1.4 6,326,568 - AO353_29115 0.27 +1.5 6,326,568 - AO353_29115 0.27 -2.2 6,326,568 - AO353_29115 0.27 -1.3 6,326,568 - AO353_29115 0.27 -0.0 6,326,568 - AO353_29115 0.27 -1.6 6,326,717 + AO353_29115 0.63 +1.1 6,326,717 + AO353_29115 0.63 +1.1 6,326,717 + AO353_29115 0.63 +0.1 6,326,717 + AO353_29115 0.63 +0.4 6,326,717 + AO353_29115 0.63 +0.1 6,326,717 + AO353_29115 0.63 -0.9 6,326,717 + AO353_29115 0.63 +0.7 6,326,717 + AO353_29115 0.63 -0.5 6,326,717 + AO353_29115 0.63 -1.1 6,326,717 + AO353_29115 0.63 -0.0 6,326,717 + AO353_29115 0.63 +1.3 6,326,718 - AO353_29115 0.63 +0.4 6,326,718 - AO353_29115 0.63 -1.9 6,326,718 - AO353_29115 0.63 -0.9 6,326,718 - AO353_29115 0.63 +1.3 6,326,751 - AO353_29115 0.71 -2.4 6,326,881 - -2.9 6,326,916 + +0.7 6,326,916 + -0.7 6,326,917 - +1.1 6,327,267 - AO353_29120 0.34 +3.3 6,327,418 - AO353_29120 0.56 +0.7 6,327,651 - +0.7 6,327,651 - +0.3 6,327,651 - -0.9 6,327,805 + -0.4 6,327,805 + +0.3 6,327,806 - +1.3 6,327,841 + AO353_29125 0.11 -0.3 6,327,841 + AO353_29125 0.11 +0.5 6,327,841 + AO353_29125 0.11 +1.3 6,327,841 + AO353_29125 0.11 -1.9 6,327,842 - AO353_29125 0.11 -1.6 6,327,842 - AO353_29125 0.11 +1.7 6,327,842 - AO353_29125 0.11 +1.0 6,327,842 - AO353_29125 0.11 -1.9 6,327,842 - AO353_29125 0.11 +0.7
Or see this region's nucleotide sequence