Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27090

Experiment: Benzalkonium Chloride 0.012 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27080 and AO353_27085 are separated by 172 nucleotidesAO353_27085 and AO353_27090 are separated by 198 nucleotidesAO353_27090 and AO353_27095 are separated by 245 nucleotides AO353_27080: AO353_27080 - hypothetical protein, at 5,934,293 to 5,934,496 _27080 AO353_27085: AO353_27085 - hypothetical protein, at 5,934,669 to 5,934,899 _27085 AO353_27090: AO353_27090 - hypothetical protein, at 5,935,098 to 5,935,340 _27090 AO353_27095: AO353_27095 - carbonic anhydrase, at 5,935,586 to 5,936,338 _27095 Position (kb) 5935 5936Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5934.131 kb on - strandat 5934.131 kb on - strandat 5934.176 kb on + strandat 5934.200 kb on + strandat 5934.201 kb on - strandat 5934.251 kb on + strandat 5934.251 kb on + strandat 5934.252 kb on - strandat 5934.252 kb on - strandat 5934.281 kb on + strandat 5934.281 kb on + strandat 5934.332 kb on - strand, within AO353_27080at 5934.344 kb on - strand, within AO353_27080at 5934.347 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strandat 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.383 kb on + strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.384 kb on - strand, within AO353_27080at 5934.387 kb on + strand, within AO353_27080at 5934.387 kb on + strand, within AO353_27080at 5934.444 kb on + strand, within AO353_27080at 5934.444 kb on + strand, within AO353_27080at 5934.445 kb on - strand, within AO353_27080at 5934.445 kb on - strand, within AO353_27080at 5934.445 kb on - strand, within AO353_27080at 5934.445 kb on - strandat 5934.456 kb on + strand, within AO353_27080at 5934.456 kb on + strand, within AO353_27080at 5934.457 kb on - strand, within AO353_27080at 5934.457 kb on - strand, within AO353_27080at 5934.457 kb on - strand, within AO353_27080at 5934.460 kb on + strand, within AO353_27080at 5934.461 kb on - strand, within AO353_27080at 5934.461 kb on - strand, within AO353_27080at 5934.461 kb on - strand, within AO353_27080at 5934.461 kb on - strand, within AO353_27080at 5934.461 kb on - strand, within AO353_27080at 5934.500 kb on + strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.501 kb on - strandat 5934.541 kb on + strandat 5934.541 kb on + strandat 5934.541 kb on + strandat 5934.541 kb on + strandat 5934.542 kb on - strandat 5934.542 kb on - strandat 5934.542 kb on - strandat 5934.542 kb on - strandat 5934.542 kb on - strandat 5934.542 kb on - strandat 5934.543 kb on + strandat 5934.543 kb on + strandat 5934.543 kb on + strandat 5934.544 kb on - strandat 5934.544 kb on - strandat 5934.544 kb on - strandat 5934.544 kb on - strandat 5934.544 kb on - strandat 5934.544 kb on - strandat 5934.631 kb on - strandat 5934.631 kb on - strandat 5934.631 kb on - strandat 5934.653 kb on + strandat 5934.653 kb on + strandat 5934.654 kb on - strandat 5934.654 kb on - strandat 5934.670 kb on + strandat 5934.710 kb on - strand, within AO353_27085at 5934.895 kb on - strandat 5934.895 kb on - strandat 5935.055 kb on + strandat 5935.055 kb on + strandat 5935.116 kb on - strandat 5935.116 kb on - strandat 5935.116 kb on - strandat 5935.295 kb on - strand, within AO353_27090at 5935.295 kb on - strand, within AO353_27090at 5935.362 kb on + strandat 5935.363 kb on - strandat 5935.363 kb on - strandat 5935.363 kb on - strandat 5935.363 kb on - strandat 5935.363 kb on - strandat 5935.363 kb on - strandat 5935.378 kb on + strandat 5935.378 kb on + strandat 5935.382 kb on + strandat 5935.389 kb on + strandat 5935.390 kb on - strandat 5935.424 kb on + strandat 5935.424 kb on + strandat 5935.442 kb on + strandat 5935.442 kb on + strandat 5935.442 kb on + strandat 5935.442 kb on + strandat 5935.456 kb on + strandat 5935.457 kb on - strandat 5935.457 kb on - strandat 5935.497 kb on + strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.498 kb on - strandat 5935.534 kb on + strandat 5935.534 kb on + strandat 5935.534 kb on + strandat 5935.534 kb on + strandat 5935.535 kb on - strandat 5935.535 kb on - strandat 5935.535 kb on - strandat 5935.569 kb on + strandat 5935.569 kb on + strandat 5935.577 kb on - strandat 5935.577 kb on - strandat 5935.577 kb on - strandat 5935.659 kb on + strandat 5935.786 kb on - strand, within AO353_27095at 5935.786 kb on - strandat 5935.803 kb on - strand, within AO353_27095at 5935.803 kb on - strand, within AO353_27095at 5935.803 kb on - strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strand, within AO353_27095at 5935.804 kb on + strandat 5935.804 kb on + strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.805 kb on - strand, within AO353_27095at 5935.878 kb on + strand, within AO353_27095at 5935.879 kb on - strand, within AO353_27095at 5935.879 kb on - strand, within AO353_27095at 5935.879 kb on - strand, within AO353_27095at 5935.884 kb on + strand, within AO353_27095at 5935.884 kb on + strand, within AO353_27095at 5935.885 kb on - strand, within AO353_27095at 5935.885 kb on - strand, within AO353_27095at 5935.919 kb on + strand, within AO353_27095at 5935.920 kb on - strand, within AO353_27095at 5936.163 kb on + strand, within AO353_27095at 5936.163 kb on + strand, within AO353_27095at 5936.164 kb on - strand, within AO353_27095at 5936.223 kb on + strand, within AO353_27095at 5936.224 kb on - strand, within AO353_27095at 5936.300 kb on + strandat 5936.300 kb on + strandat 5936.300 kb on + strandat 5936.301 kb on - strandat 5936.301 kb on - strandat 5936.301 kb on - strandat 5936.301 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
remove
5,934,131 - -1.7
5,934,131 - -1.3
5,934,176 + -2.1
5,934,200 + -0.2
5,934,201 - -0.9
5,934,251 + -0.9
5,934,251 + -2.4
5,934,252 - -0.6
5,934,252 - -0.3
5,934,281 + +0.7
5,934,281 + -1.4
5,934,332 - AO353_27080 0.19 +3.1
5,934,344 - AO353_27080 0.25 -0.1
5,934,347 + AO353_27080 0.26 -0.1
5,934,383 + AO353_27080 0.44 +3.3
5,934,383 + AO353_27080 0.44 +0.7
5,934,383 + AO353_27080 0.44 -0.1
5,934,383 + AO353_27080 0.44 +1.3
5,934,383 + AO353_27080 0.44 +0.3
5,934,383 + AO353_27080 0.44 +0.8
5,934,383 + -0.1
5,934,383 + AO353_27080 0.44 -1.9
5,934,383 + AO353_27080 0.44 +0.7
5,934,383 + AO353_27080 0.44 +1.0
5,934,383 + AO353_27080 0.44 +1.0
5,934,383 + AO353_27080 0.44 -0.9
5,934,383 + AO353_27080 0.44 -0.3
5,934,384 - AO353_27080 0.45 -1.3
5,934,384 - AO353_27080 0.45 +0.7
5,934,384 - AO353_27080 0.45 -0.3
5,934,384 - AO353_27080 0.45 -1.1
5,934,384 - AO353_27080 0.45 +0.7
5,934,384 - AO353_27080 0.45 +0.5
5,934,384 - AO353_27080 0.45 +0.3
5,934,384 - AO353_27080 0.45 -2.1
5,934,384 - AO353_27080 0.45 -1.1
5,934,384 - AO353_27080 0.45 +0.7
5,934,384 - AO353_27080 0.45 +0.3
5,934,384 - AO353_27080 0.45 +0.1
5,934,384 - AO353_27080 0.45 -2.1
5,934,384 - AO353_27080 0.45 -0.3
5,934,384 - AO353_27080 0.45 +1.3
5,934,384 - AO353_27080 0.45 +3.0
5,934,384 - AO353_27080 0.45 -2.3
5,934,384 - AO353_27080 0.45 -0.0
5,934,384 - AO353_27080 0.45 +1.7
5,934,387 + AO353_27080 0.46 -0.1
5,934,387 + AO353_27080 0.46 -0.9
5,934,444 + AO353_27080 0.74 +0.7
5,934,444 + AO353_27080 0.74 -0.2
5,934,445 - AO353_27080 0.75 -0.8
5,934,445 - AO353_27080 0.75 +0.3
5,934,445 - AO353_27080 0.75 +1.7
5,934,445 - +1.4
5,934,456 + AO353_27080 0.80 -0.7
5,934,456 + AO353_27080 0.80 +0.7
5,934,457 - AO353_27080 0.80 -0.6
5,934,457 - AO353_27080 0.80 +0.1
5,934,457 - AO353_27080 0.80 -0.2
5,934,460 + AO353_27080 0.82 +0.2
5,934,461 - AO353_27080 0.82 -0.0
5,934,461 - AO353_27080 0.82 +0.7
5,934,461 - AO353_27080 0.82 -0.9
5,934,461 - AO353_27080 0.82 +0.5
5,934,461 - AO353_27080 0.82 -0.9
5,934,500 + +1.4
5,934,501 - -0.1
5,934,501 - -0.1
5,934,501 - +0.4
5,934,501 - -2.5
5,934,501 - +1.2
5,934,501 - -1.3
5,934,501 - +0.2
5,934,541 + +1.3
5,934,541 + +0.1
5,934,541 + +1.3
5,934,541 + +0.5
5,934,542 - -0.4
5,934,542 - -0.1
5,934,542 - -0.1
5,934,542 - +1.3
5,934,542 - +0.3
5,934,542 - +0.1
5,934,543 + +0.1
5,934,543 + +0.7
5,934,543 + +0.3
5,934,544 - -0.7
5,934,544 - +1.1
5,934,544 - -1.7
5,934,544 - -2.7
5,934,544 - -1.9
5,934,544 - -0.8
5,934,631 - -1.7
5,934,631 - -0.9
5,934,631 - -2.5
5,934,653 + +0.4
5,934,653 + -0.1
5,934,654 - +0.7
5,934,654 - -0.1
5,934,670 + +0.6
5,934,710 - AO353_27085 0.18 -1.0
5,934,895 - -1.3
5,934,895 - -0.3
5,935,055 + -0.5
5,935,055 + +0.8
5,935,116 - -0.3
5,935,116 - -0.1
5,935,116 - +0.0
5,935,295 - AO353_27090 0.81 -0.8
5,935,295 - AO353_27090 0.81 -2.1
5,935,362 + -1.3
5,935,363 - +1.4
5,935,363 - +0.2
5,935,363 - -0.6
5,935,363 - +0.7
5,935,363 - +2.5
5,935,363 - +0.3
5,935,378 + +0.5
5,935,378 + -0.9
5,935,382 + -0.3
5,935,389 + +0.9
5,935,390 - -0.3
5,935,424 + +0.4
5,935,424 + -1.0
5,935,442 + +0.3
5,935,442 + +1.7
5,935,442 + -0.9
5,935,442 + -1.0
5,935,456 + -0.7
5,935,457 - -1.3
5,935,457 - -2.2
5,935,497 + -2.1
5,935,498 - +0.7
5,935,498 - -0.9
5,935,498 - -0.8
5,935,498 - -2.5
5,935,498 - -0.3
5,935,498 - -1.3
5,935,498 - -1.7
5,935,534 + -0.3
5,935,534 + +0.3
5,935,534 + -0.6
5,935,534 + +0.7
5,935,535 - +0.3
5,935,535 - -1.8
5,935,535 - +1.0
5,935,569 + -1.5
5,935,569 + +0.3
5,935,577 - -1.9
5,935,577 - +0.3
5,935,577 - -0.1
5,935,659 + +0.5
5,935,786 - AO353_27095 0.27 +1.1
5,935,786 - +0.7
5,935,803 - AO353_27095 0.29 -0.0
5,935,803 - AO353_27095 0.29 -0.3
5,935,803 - AO353_27095 0.29 -0.3
5,935,804 + AO353_27095 0.29 -0.3
5,935,804 + AO353_27095 0.29 -1.1
5,935,804 + AO353_27095 0.29 +0.7
5,935,804 + AO353_27095 0.29 +0.1
5,935,804 + AO353_27095 0.29 +0.1
5,935,804 + AO353_27095 0.29 -1.7
5,935,804 + AO353_27095 0.29 -0.1
5,935,804 + AO353_27095 0.29 +0.0
5,935,804 + AO353_27095 0.29 -1.7
5,935,804 + AO353_27095 0.29 -0.5
5,935,804 + AO353_27095 0.29 -1.3
5,935,804 + AO353_27095 0.29 -2.3
5,935,804 + AO353_27095 0.29 +1.0
5,935,804 + +1.0
5,935,804 + AO353_27095 0.29 +0.3
5,935,805 - AO353_27095 0.29 -0.7
5,935,805 - AO353_27095 0.29 -1.9
5,935,805 - AO353_27095 0.29 -0.3
5,935,805 - AO353_27095 0.29 +0.7
5,935,805 - AO353_27095 0.29 -0.3
5,935,805 - AO353_27095 0.29 +0.1
5,935,805 - AO353_27095 0.29 -1.1
5,935,805 - AO353_27095 0.29 -0.2
5,935,878 + AO353_27095 0.39 +2.0
5,935,879 - AO353_27095 0.39 -0.3
5,935,879 - AO353_27095 0.39 -0.7
5,935,879 - AO353_27095 0.39 -0.3
5,935,884 + AO353_27095 0.40 -0.9
5,935,884 + AO353_27095 0.40 -1.4
5,935,885 - AO353_27095 0.40 +0.7
5,935,885 - AO353_27095 0.40 -0.1
5,935,919 + AO353_27095 0.44 -0.9
5,935,920 - AO353_27095 0.44 -1.6
5,936,163 + AO353_27095 0.77 -0.1
5,936,163 + AO353_27095 0.77 +1.1
5,936,164 - AO353_27095 0.77 +0.4
5,936,223 + AO353_27095 0.85 +0.9
5,936,224 - AO353_27095 0.85 -0.6
5,936,300 + +0.0
5,936,300 + +0.2
5,936,300 + -0.1
5,936,301 - -1.7
5,936,301 - +1.9
5,936,301 - -0.6
5,936,301 - -0.9

Or see this region's nucleotide sequence