Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25470

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25465 and AO353_25470 are separated by 26 nucleotidesAO353_25470 and AO353_25475 overlap by 4 nucleotides AO353_25465: AO353_25465 - histidine kinase, at 5,612,246 to 5,613,538 _25465 AO353_25470: AO353_25470 - acriflavine resistance protein B, at 5,613,565 to 5,616,642 _25470 AO353_25475: AO353_25475 - multidrug resistance protein, at 5,616,639 to 5,617,832 _25475 Position (kb) 5613 5614 5615 5616 5617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5612.577 kb on + strand, within AO353_25465at 5612.577 kb on + strand, within AO353_25465at 5612.577 kb on + strand, within AO353_25465at 5612.577 kb on + strand, within AO353_25465at 5612.578 kb on - strand, within AO353_25465at 5612.578 kb on - strand, within AO353_25465at 5612.580 kb on + strand, within AO353_25465at 5612.580 kb on + strand, within AO353_25465at 5612.580 kb on + strand, within AO353_25465at 5612.581 kb on - strand, within AO353_25465at 5612.581 kb on - strand, within AO353_25465at 5612.581 kb on - strand, within AO353_25465at 5612.608 kb on - strand, within AO353_25465at 5612.608 kb on - strand, within AO353_25465at 5612.779 kb on + strand, within AO353_25465at 5612.982 kb on + strand, within AO353_25465at 5612.982 kb on + strand, within AO353_25465at 5612.983 kb on - strand, within AO353_25465at 5612.983 kb on - strand, within AO353_25465at 5613.014 kb on + strand, within AO353_25465at 5613.015 kb on - strand, within AO353_25465at 5613.015 kb on - strand, within AO353_25465at 5613.142 kb on - strand, within AO353_25465at 5613.142 kb on - strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.192 kb on + strand, within AO353_25465at 5613.193 kb on - strand, within AO353_25465at 5613.193 kb on - strand, within AO353_25465at 5613.193 kb on - strand, within AO353_25465at 5613.225 kb on + strand, within AO353_25465at 5613.225 kb on + strand, within AO353_25465at 5613.225 kb on + strand, within AO353_25465at 5613.225 kb on + strand, within AO353_25465at 5613.226 kb on - strand, within AO353_25465at 5613.226 kb on - strand, within AO353_25465at 5613.226 kb on - strand, within AO353_25465at 5613.226 kb on - strand, within AO353_25465at 5613.226 kb on - strand, within AO353_25465at 5613.228 kb on + strand, within AO353_25465at 5613.228 kb on + strand, within AO353_25465at 5613.229 kb on - strand, within AO353_25465at 5613.229 kb on - strand, within AO353_25465at 5613.229 kb on - strand, within AO353_25465at 5613.229 kb on - strand, within AO353_25465at 5613.229 kb on - strand, within AO353_25465at 5613.433 kb on + strandat 5613.434 kb on - strandat 5613.627 kb on - strandat 5613.644 kb on + strandat 5613.644 kb on + strandat 5613.645 kb on - strandat 5613.645 kb on - strandat 5613.645 kb on - strandat 5613.684 kb on + strandat 5613.685 kb on - strandat 5613.907 kb on - strand, within AO353_25470at 5613.907 kb on - strand, within AO353_25470at 5613.907 kb on - strand, within AO353_25470at 5614.025 kb on + strand, within AO353_25470at 5614.046 kb on + strand, within AO353_25470at 5614.046 kb on + strand, within AO353_25470at 5614.046 kb on + strand, within AO353_25470at 5614.047 kb on - strand, within AO353_25470at 5614.333 kb on + strand, within AO353_25470at 5614.333 kb on + strand, within AO353_25470at 5614.333 kb on + strand, within AO353_25470at 5614.334 kb on - strand, within AO353_25470at 5614.334 kb on - strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.337 kb on + strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.338 kb on - strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.339 kb on + strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.340 kb on - strand, within AO353_25470at 5614.455 kb on - strand, within AO353_25470at 5614.455 kb on - strandat 5614.459 kb on + strand, within AO353_25470at 5614.459 kb on + strand, within AO353_25470at 5614.459 kb on + strand, within AO353_25470at 5614.460 kb on - strand, within AO353_25470at 5614.460 kb on - strand, within AO353_25470at 5614.460 kb on - strand, within AO353_25470at 5614.649 kb on + strand, within AO353_25470at 5614.650 kb on - strand, within AO353_25470at 5614.665 kb on + strand, within AO353_25470at 5614.710 kb on - strand, within AO353_25470at 5614.853 kb on + strand, within AO353_25470at 5614.853 kb on + strand, within AO353_25470at 5614.853 kb on + strand, within AO353_25470at 5614.854 kb on - strand, within AO353_25470at 5614.854 kb on - strand, within AO353_25470at 5615.009 kb on + strand, within AO353_25470at 5615.009 kb on + strand, within AO353_25470at 5615.010 kb on - strand, within AO353_25470at 5615.010 kb on - strand, within AO353_25470at 5615.014 kb on + strand, within AO353_25470at 5615.014 kb on + strand, within AO353_25470at 5615.015 kb on - strand, within AO353_25470at 5615.015 kb on - strand, within AO353_25470at 5615.015 kb on - strand, within AO353_25470at 5615.030 kb on - strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.510 kb on + strand, within AO353_25470at 5615.511 kb on - strand, within AO353_25470at 5615.511 kb on - strand, within AO353_25470at 5615.511 kb on - strand, within AO353_25470at 5615.511 kb on - strand, within AO353_25470at 5615.511 kb on - strand, within AO353_25470at 5615.838 kb on + strand, within AO353_25470at 5615.857 kb on + strand, within AO353_25470at 5615.857 kb on + strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.899 kb on - strand, within AO353_25470at 5615.900 kb on + strand, within AO353_25470at 5615.901 kb on - strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.161 kb on + strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.162 kb on - strand, within AO353_25470at 5616.267 kb on + strand, within AO353_25470at 5616.267 kb on + strand, within AO353_25470at 5616.268 kb on - strand, within AO353_25470at 5616.528 kb on + strandat 5616.529 kb on - strandat 5616.558 kb on - strandat 5616.558 kb on - strandat 5616.558 kb on - strandat 5616.849 kb on + strand, within AO353_25475at 5616.849 kb on + strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5617.363 kb on + strandat 5617.607 kb on + strand, within AO353_25475

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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5,612,577 + AO353_25465 0.26 -0.2
5,612,577 + AO353_25465 0.26 +1.6
5,612,577 + AO353_25465 0.26 -0.2
5,612,577 + AO353_25465 0.26 +0.1
5,612,578 - AO353_25465 0.26 +0.9
5,612,578 - AO353_25465 0.26 +2.0
5,612,580 + AO353_25465 0.26 +0.2
5,612,580 + AO353_25465 0.26 -0.1
5,612,580 + AO353_25465 0.26 -2.0
5,612,581 - AO353_25465 0.26 +1.6
5,612,581 - AO353_25465 0.26 +0.7
5,612,581 - AO353_25465 0.26 +2.2
5,612,608 - AO353_25465 0.28 +0.9
5,612,608 - AO353_25465 0.28 +0.6
5,612,779 + AO353_25465 0.41 +0.2
5,612,982 + AO353_25465 0.57 -1.4
5,612,982 + AO353_25465 0.57 +2.2
5,612,983 - AO353_25465 0.57 -0.4
5,612,983 - AO353_25465 0.57 -0.4
5,613,014 + AO353_25465 0.59 -0.6
5,613,015 - AO353_25465 0.59 +1.1
5,613,015 - AO353_25465 0.59 +1.2
5,613,142 - AO353_25465 0.69 -0.8
5,613,142 - AO353_25465 0.69 -0.4
5,613,192 + AO353_25465 0.73 -1.0
5,613,192 + AO353_25465 0.73 -0.3
5,613,192 + AO353_25465 0.73 +1.8
5,613,192 + AO353_25465 0.73 -0.3
5,613,192 + AO353_25465 0.73 +0.6
5,613,192 + AO353_25465 0.73 -1.8
5,613,193 - AO353_25465 0.73 +1.2
5,613,193 - AO353_25465 0.73 -2.2
5,613,193 - AO353_25465 0.73 +1.2
5,613,225 + AO353_25465 0.76 +0.6
5,613,225 + AO353_25465 0.76 -1.0
5,613,225 + AO353_25465 0.76 +1.1
5,613,225 + AO353_25465 0.76 +1.1
5,613,226 - AO353_25465 0.76 -0.8
5,613,226 - AO353_25465 0.76 -2.4
5,613,226 - AO353_25465 0.76 +0.2
5,613,226 - AO353_25465 0.76 +0.2
5,613,226 - AO353_25465 0.76 +0.3
5,613,228 + AO353_25465 0.76 -0.8
5,613,228 + AO353_25465 0.76 +0.6
5,613,229 - AO353_25465 0.76 -0.4
5,613,229 - AO353_25465 0.76 +1.6
5,613,229 - AO353_25465 0.76 -0.1
5,613,229 - AO353_25465 0.76 -2.2
5,613,229 - AO353_25465 0.76 +0.6
5,613,433 + -0.0
5,613,434 - +0.6
5,613,627 - -1.2
5,613,644 + +0.9
5,613,644 + -1.2
5,613,645 - +0.4
5,613,645 - -0.4
5,613,645 - -1.0
5,613,684 + +0.6
5,613,685 - +2.2
5,613,907 - AO353_25470 0.11 -1.3
5,613,907 - AO353_25470 0.11 -0.4
5,613,907 - AO353_25470 0.11 +0.0
5,614,025 + AO353_25470 0.15 +0.2
5,614,046 + AO353_25470 0.16 +0.6
5,614,046 + AO353_25470 0.16 -2.0
5,614,046 + AO353_25470 0.16 +1.6
5,614,047 - AO353_25470 0.16 +0.5
5,614,333 + AO353_25470 0.25 +0.3
5,614,333 + AO353_25470 0.25 +0.8
5,614,333 + AO353_25470 0.25 -0.1
5,614,334 - AO353_25470 0.25 -0.8
5,614,334 - AO353_25470 0.25 +0.6
5,614,337 + AO353_25470 0.25 -1.5
5,614,337 + AO353_25470 0.25 +0.9
5,614,337 + AO353_25470 0.25 -0.1
5,614,337 + AO353_25470 0.25 +1.2
5,614,337 + AO353_25470 0.25 +0.4
5,614,337 + AO353_25470 0.25 +0.2
5,614,337 + AO353_25470 0.25 -1.4
5,614,337 + AO353_25470 0.25 +1.2
5,614,338 - AO353_25470 0.25 +1.8
5,614,338 - AO353_25470 0.25 -0.4
5,614,338 - AO353_25470 0.25 -0.4
5,614,338 - AO353_25470 0.25 +0.6
5,614,338 - AO353_25470 0.25 -1.6
5,614,338 - AO353_25470 0.25 -0.3
5,614,338 - AO353_25470 0.25 -0.4
5,614,338 - AO353_25470 0.25 -1.0
5,614,338 - AO353_25470 0.25 +1.6
5,614,338 - AO353_25470 0.25 -0.1
5,614,338 - AO353_25470 0.25 +1.1
5,614,338 - AO353_25470 0.25 +0.4
5,614,338 - AO353_25470 0.25 -0.2
5,614,339 + AO353_25470 0.25 +0.6
5,614,339 + AO353_25470 0.25 +1.0
5,614,339 + AO353_25470 0.25 +0.2
5,614,339 + AO353_25470 0.25 -0.6
5,614,339 + AO353_25470 0.25 -0.4
5,614,339 + AO353_25470 0.25 -0.2
5,614,339 + AO353_25470 0.25 -0.4
5,614,339 + AO353_25470 0.25 +0.7
5,614,339 + AO353_25470 0.25 +0.9
5,614,340 - AO353_25470 0.25 -0.4
5,614,340 - AO353_25470 0.25 +0.6
5,614,340 - AO353_25470 0.25 -0.8
5,614,340 - AO353_25470 0.25 -0.2
5,614,340 - AO353_25470 0.25 -0.8
5,614,340 - AO353_25470 0.25 +0.2
5,614,340 - AO353_25470 0.25 +0.6
5,614,340 - AO353_25470 0.25 +0.6
5,614,340 - AO353_25470 0.25 +0.2
5,614,340 - AO353_25470 0.25 -1.5
5,614,455 - AO353_25470 0.29 +1.6
5,614,455 - -1.0
5,614,459 + AO353_25470 0.29 -0.4
5,614,459 + AO353_25470 0.29 +2.0
5,614,459 + AO353_25470 0.29 -1.0
5,614,460 - AO353_25470 0.29 -2.0
5,614,460 - AO353_25470 0.29 +1.6
5,614,460 - AO353_25470 0.29 -1.1
5,614,649 + AO353_25470 0.35 -0.1
5,614,650 - AO353_25470 0.35 -2.4
5,614,665 + AO353_25470 0.36 +0.9
5,614,710 - AO353_25470 0.37 -1.4
5,614,853 + AO353_25470 0.42 -2.2
5,614,853 + AO353_25470 0.42 -0.2
5,614,853 + AO353_25470 0.42 -1.2
5,614,854 - AO353_25470 0.42 -0.0
5,614,854 - AO353_25470 0.42 +0.6
5,615,009 + AO353_25470 0.47 -1.2
5,615,009 + AO353_25470 0.47 +0.9
5,615,010 - AO353_25470 0.47 +0.7
5,615,010 - AO353_25470 0.47 +1.2
5,615,014 + AO353_25470 0.47 -0.4
5,615,014 + AO353_25470 0.47 +0.1
5,615,015 - AO353_25470 0.47 -0.0
5,615,015 - AO353_25470 0.47 -0.4
5,615,015 - AO353_25470 0.47 +0.2
5,615,030 - AO353_25470 0.48 +0.1
5,615,510 + AO353_25470 0.63 +0.6
5,615,510 + AO353_25470 0.63 -2.9
5,615,510 + AO353_25470 0.63 +0.1
5,615,510 + AO353_25470 0.63 -1.5
5,615,510 + AO353_25470 0.63 -0.7
5,615,510 + AO353_25470 0.63 +1.9
5,615,511 - AO353_25470 0.63 +0.6
5,615,511 - AO353_25470 0.63 -1.4
5,615,511 - AO353_25470 0.63 -2.2
5,615,511 - AO353_25470 0.63 +0.2
5,615,511 - AO353_25470 0.63 -0.4
5,615,838 + AO353_25470 0.74 -0.8
5,615,857 + AO353_25470 0.74 +0.3
5,615,857 + AO353_25470 0.74 -0.8
5,615,899 - AO353_25470 0.76 -0.2
5,615,899 - AO353_25470 0.76 -0.3
5,615,899 - AO353_25470 0.76 +0.1
5,615,899 - AO353_25470 0.76 +1.0
5,615,900 + AO353_25470 0.76 +2.6
5,615,901 - AO353_25470 0.76 -1.0
5,616,161 + AO353_25470 0.84 -2.0
5,616,161 + AO353_25470 0.84 +1.2
5,616,161 + AO353_25470 0.84 -0.3
5,616,161 + AO353_25470 0.84 +0.2
5,616,161 + AO353_25470 0.84 +0.9
5,616,161 + AO353_25470 0.84 +0.8
5,616,161 + AO353_25470 0.84 -0.7
5,616,161 + AO353_25470 0.84 +0.4
5,616,161 + AO353_25470 0.84 +1.3
5,616,162 - AO353_25470 0.84 +0.3
5,616,162 - AO353_25470 0.84 -0.0
5,616,162 - AO353_25470 0.84 +0.6
5,616,162 - AO353_25470 0.84 -0.7
5,616,162 - AO353_25470 0.84 +0.6
5,616,162 - AO353_25470 0.84 -1.2
5,616,162 - AO353_25470 0.84 -1.8
5,616,162 - AO353_25470 0.84 +0.6
5,616,162 - AO353_25470 0.84 -0.2
5,616,162 - AO353_25470 0.84 +0.2
5,616,267 + AO353_25470 0.88 -1.8
5,616,267 + AO353_25470 0.88 -0.0
5,616,268 - AO353_25470 0.88 +0.6
5,616,528 + +0.3
5,616,529 - -0.0
5,616,558 - -0.6
5,616,558 - -1.0
5,616,558 - +1.3
5,616,849 + AO353_25475 0.18 +0.9
5,616,849 + AO353_25475 0.18 -1.0
5,616,850 - AO353_25475 0.18 -0.2
5,616,850 - AO353_25475 0.18 -0.0
5,616,850 - AO353_25475 0.18 -1.0
5,616,853 + AO353_25475 0.18 -1.2
5,616,853 + AO353_25475 0.18 +1.8
5,616,853 + AO353_25475 0.18 -0.8
5,616,853 + AO353_25475 0.18 -1.4
5,616,853 + AO353_25475 0.18 +0.6
5,616,854 - AO353_25475 0.18 -1.4
5,616,854 - AO353_25475 0.18 -0.0
5,616,854 - AO353_25475 0.18 -1.0
5,616,854 - AO353_25475 0.18 -0.8
5,617,363 + -1.0
5,617,607 + AO353_25475 0.81 +0.6

Or see this region's nucleotide sequence