Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25410

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25400 and AO353_25405 overlap by 4 nucleotidesAO353_25405 and AO353_25410 are separated by 304 nucleotidesAO353_25410 and AO353_25415 are separated by 57 nucleotides AO353_25400: AO353_25400 - molybdenum cofactor biosynthesis protein MoaA, at 5,600,550 to 5,601,755 _25400 AO353_25405: AO353_25405 - molybdenum cofactor biosynthesis protein B, at 5,601,752 to 5,602,291 _25405 AO353_25410: AO353_25410 - LysR family transcriptional regulator, at 5,602,596 to 5,603,486 _25410 AO353_25415: AO353_25415 - LysR family transcriptional regulator, at 5,603,544 to 5,604,431 _25415 Position (kb) 5602 5603 5604Strain fitness (log2 ratio) -2 -1 0 1 2at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.081 kb on + strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.082 kb on - strand, within AO353_25405at 5602.126 kb on - strand, within AO353_25405at 5602.126 kb on - strand, within AO353_25405at 5602.147 kb on + strand, within AO353_25405at 5602.208 kb on - strand, within AO353_25405at 5602.208 kb on - strand, within AO353_25405at 5602.208 kb on - strandat 5602.219 kb on - strand, within AO353_25405at 5602.219 kb on - strand, within AO353_25405at 5602.252 kb on + strandat 5602.253 kb on - strandat 5602.268 kb on + strandat 5602.269 kb on - strandat 5602.282 kb on + strandat 5602.283 kb on - strandat 5602.359 kb on - strandat 5602.359 kb on - strandat 5602.359 kb on - strandat 5602.422 kb on - strandat 5602.422 kb on - strandat 5602.422 kb on - strandat 5602.424 kb on + strandat 5602.424 kb on + strandat 5602.425 kb on - strandat 5602.435 kb on - strandat 5602.450 kb on - strandat 5602.474 kb on + strandat 5602.474 kb on + strandat 5602.474 kb on + strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.475 kb on - strandat 5602.551 kb on + strandat 5602.551 kb on + strandat 5602.552 kb on - strandat 5602.560 kb on + strandat 5602.560 kb on + strandat 5602.561 kb on - strandat 5602.561 kb on - strandat 5602.676 kb on + strandat 5602.676 kb on + strandat 5602.677 kb on - strandat 5602.677 kb on - strandat 5602.861 kb on + strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.918 kb on - strand, within AO353_25410at 5602.937 kb on + strand, within AO353_25410at 5602.938 kb on - strand, within AO353_25410at 5602.987 kb on + strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5602.988 kb on - strand, within AO353_25410at 5603.003 kb on + strand, within AO353_25410at 5603.031 kb on + strand, within AO353_25410at 5603.032 kb on - strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.055 kb on + strand, within AO353_25410at 5603.056 kb on - strand, within AO353_25410at 5603.100 kb on + strand, within AO353_25410at 5603.248 kb on + strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.249 kb on - strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.268 kb on + strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.269 kb on - strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.360 kb on + strand, within AO353_25410at 5603.652 kb on + strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.653 kb on - strand, within AO353_25415at 5603.776 kb on + strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.777 kb on - strand, within AO353_25415at 5603.989 kb on + strand, within AO353_25415at 5603.990 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.042 kb on - strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.223 kb on + strand, within AO353_25415at 5604.224 kb on - strand, within AO353_25415at 5604.361 kb on + strandat 5604.361 kb on + strandat 5604.362 kb on - strandat 5604.478 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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5,602,081 + AO353_25405 0.61 -1.8
5,602,081 + AO353_25405 0.61 -0.0
5,602,081 + AO353_25405 0.61 +0.6
5,602,081 + AO353_25405 0.61 -1.0
5,602,082 - AO353_25405 0.61 -1.4
5,602,082 - AO353_25405 0.61 -1.2
5,602,082 - AO353_25405 0.61 -1.6
5,602,126 - AO353_25405 0.69 -1.4
5,602,126 - AO353_25405 0.69 -0.0
5,602,147 + AO353_25405 0.73 -1.4
5,602,208 - AO353_25405 0.84 -1.3
5,602,208 - AO353_25405 0.84 +0.6
5,602,208 - +0.6
5,602,219 - AO353_25405 0.86 -0.4
5,602,219 - AO353_25405 0.86 -0.5
5,602,252 + -0.9
5,602,253 - +0.2
5,602,268 + -0.1
5,602,269 - -2.2
5,602,282 + -1.0
5,602,283 - -1.2
5,602,359 - -0.8
5,602,359 - +1.6
5,602,359 - +1.6
5,602,422 - +0.1
5,602,422 - -0.0
5,602,422 - -1.6
5,602,424 + -0.1
5,602,424 + +0.6
5,602,425 - +0.8
5,602,435 - +0.7
5,602,450 - -0.2
5,602,474 + -0.4
5,602,474 + -2.0
5,602,474 + -1.0
5,602,475 - +1.1
5,602,475 - -0.3
5,602,475 - -0.0
5,602,475 - +1.1
5,602,475 - +1.6
5,602,475 - -1.2
5,602,475 - -0.2
5,602,475 - -0.2
5,602,475 - -0.4
5,602,551 + -0.0
5,602,551 + +0.6
5,602,552 - +0.1
5,602,560 + +0.8
5,602,560 + +1.6
5,602,561 - +2.2
5,602,561 - -1.0
5,602,676 + +0.3
5,602,676 + +0.6
5,602,677 - -1.8
5,602,677 - -0.4
5,602,861 + AO353_25410 0.30 -0.8
5,602,918 - AO353_25410 0.36 +1.2
5,602,918 - AO353_25410 0.36 -0.4
5,602,937 + AO353_25410 0.38 -0.2
5,602,938 - AO353_25410 0.38 -2.0
5,602,987 + AO353_25410 0.44 -0.7
5,602,988 - AO353_25410 0.44 -1.0
5,602,988 - AO353_25410 0.44 +1.0
5,603,003 + AO353_25410 0.46 -0.4
5,603,031 + AO353_25410 0.49 -1.4
5,603,032 - AO353_25410 0.49 -0.7
5,603,055 + AO353_25410 0.52 -0.7
5,603,055 + AO353_25410 0.52 -0.9
5,603,055 + AO353_25410 0.52 -1.0
5,603,056 - AO353_25410 0.52 -0.2
5,603,100 + AO353_25410 0.57 -1.8
5,603,248 + AO353_25410 0.73 -0.1
5,603,249 - AO353_25410 0.73 -1.2
5,603,249 - AO353_25410 0.73 +1.4
5,603,268 + AO353_25410 0.75 -0.9
5,603,268 + AO353_25410 0.75 -0.8
5,603,268 + AO353_25410 0.75 -1.3
5,603,268 + AO353_25410 0.75 +0.6
5,603,269 - AO353_25410 0.76 +0.8
5,603,269 - AO353_25410 0.76 +0.2
5,603,360 + AO353_25410 0.86 +0.6
5,603,360 + AO353_25410 0.86 -1.4
5,603,652 + AO353_25415 0.12 -0.4
5,603,653 - AO353_25415 0.12 +1.2
5,603,653 - AO353_25415 0.12 -0.0
5,603,776 + AO353_25415 0.26 +0.2
5,603,777 - AO353_25415 0.26 -1.4
5,603,777 - AO353_25415 0.26 -0.7
5,603,777 - AO353_25415 0.26 +1.4
5,603,777 - AO353_25415 0.26 +0.8
5,603,989 + AO353_25415 0.50 -0.0
5,603,990 - AO353_25415 0.50 -0.1
5,604,042 - AO353_25415 0.56 +2.3
5,604,042 - AO353_25415 0.56 -0.3
5,604,042 - AO353_25415 0.56 -0.1
5,604,223 + AO353_25415 0.76 +0.2
5,604,223 + AO353_25415 0.76 +0.6
5,604,223 + AO353_25415 0.76 +0.2
5,604,224 - AO353_25415 0.77 +1.4
5,604,361 + -0.1
5,604,361 + +1.4
5,604,362 - -0.4
5,604,478 + -1.8

Or see this region's nucleotide sequence