Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22685

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22680 and AO353_22685 are separated by 319 nucleotidesAO353_22685 and AO353_22690 are separated by 122 nucleotides AO353_22680: AO353_22680 - aldehyde dehydrogenase, at 4,964,898 to 4,966,523 _22680 AO353_22685: AO353_22685 - peroxidase, at 4,966,843 to 4,967,730 _22685 AO353_22690: AO353_22690 - amidohydrolase, at 4,967,853 to 4,969,598 _22690 Position (kb) 4966 4967 4968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4965.958 kb on + strand, within AO353_22680at 4965.959 kb on - strand, within AO353_22680at 4965.959 kb on - strand, within AO353_22680at 4965.964 kb on + strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4965.965 kb on - strand, within AO353_22680at 4966.090 kb on + strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.091 kb on - strand, within AO353_22680at 4966.101 kb on - strand, within AO353_22680at 4966.101 kb on - strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.264 kb on + strand, within AO353_22680at 4966.265 kb on - strand, within AO353_22680at 4966.265 kb on - strand, within AO353_22680at 4966.366 kb on + strandat 4966.366 kb on + strandat 4966.367 kb on - strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.429 kb on + strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.430 kb on - strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.633 kb on + strandat 4966.634 kb on - strandat 4966.667 kb on + strandat 4966.667 kb on + strandat 4966.667 kb on + strandat 4966.686 kb on - strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.849 kb on + strandat 4966.850 kb on - strandat 4966.850 kb on - strandat 4966.850 kb on - strandat 4966.852 kb on + strandat 4966.852 kb on + strandat 4967.136 kb on + strand, within AO353_22685at 4967.137 kb on - strand, within AO353_22685at 4967.143 kb on - strand, within AO353_22685at 4967.211 kb on + strand, within AO353_22685at 4967.212 kb on - strand, within AO353_22685at 4967.212 kb on - strand, within AO353_22685at 4967.237 kb on - strand, within AO353_22685at 4967.525 kb on + strand, within AO353_22685at 4967.525 kb on + strand, within AO353_22685at 4967.525 kb on + strand, within AO353_22685at 4967.526 kb on - strand, within AO353_22685at 4967.526 kb on - strand, within AO353_22685at 4967.669 kb on - strandat 4967.669 kb on - strandat 4967.669 kb on - strandat 4967.671 kb on + strandat 4967.671 kb on + strandat 4967.671 kb on + strandat 4967.671 kb on + strandat 4967.671 kb on + strandat 4967.672 kb on - strandat 4967.672 kb on - strandat 4967.672 kb on - strandat 4967.672 kb on - strandat 4967.736 kb on - strandat 4967.750 kb on - strandat 4967.788 kb on + strandat 4967.788 kb on + strandat 4967.789 kb on - strandat 4967.797 kb on + strandat 4967.797 kb on + strandat 4967.797 kb on + strandat 4967.798 kb on - strandat 4967.798 kb on - strandat 4967.798 kb on - strandat 4967.825 kb on + strandat 4967.854 kb on + strandat 4967.854 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.872 kb on + strandat 4967.873 kb on - strandat 4968.040 kb on + strand, within AO353_22690at 4968.040 kb on + strand, within AO353_22690at 4968.041 kb on - strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.046 kb on + strand, within AO353_22690at 4968.047 kb on - strand, within AO353_22690at 4968.087 kb on + strand, within AO353_22690at 4968.088 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strand, within AO353_22690at 4968.266 kb on - strandat 4968.550 kb on + strand, within AO353_22690at 4968.550 kb on + strand, within AO353_22690at 4968.550 kb on + strand, within AO353_22690

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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4,965,958 + AO353_22680 0.65 +0.3
4,965,959 - AO353_22680 0.65 -0.5
4,965,959 - AO353_22680 0.65 -0.4
4,965,964 + AO353_22680 0.66 -0.4
4,965,965 - AO353_22680 0.66 +0.8
4,965,965 - AO353_22680 0.66 -0.8
4,965,965 - AO353_22680 0.66 -1.4
4,966,090 + AO353_22680 0.73 -0.6
4,966,091 - AO353_22680 0.73 +1.1
4,966,091 - AO353_22680 0.73 -2.8
4,966,091 - AO353_22680 0.73 +1.4
4,966,091 - AO353_22680 0.73 +0.3
4,966,101 - AO353_22680 0.74 -1.9
4,966,101 - AO353_22680 0.74 -0.1
4,966,264 + AO353_22680 0.84 +0.6
4,966,264 + AO353_22680 0.84 -1.4
4,966,264 + AO353_22680 0.84 -3.2
4,966,264 + AO353_22680 0.84 +0.3
4,966,265 - AO353_22680 0.84 -0.2
4,966,265 - AO353_22680 0.84 +0.6
4,966,366 + +0.6
4,966,366 + -0.5
4,966,367 - -1.4
4,966,429 + +0.6
4,966,429 + +0.5
4,966,429 + +0.1
4,966,429 + +1.2
4,966,429 + -1.4
4,966,429 + -1.9
4,966,429 + -2.8
4,966,429 + -1.4
4,966,430 - +0.8
4,966,430 - -0.9
4,966,430 - +1.2
4,966,430 - -0.6
4,966,633 + +0.6
4,966,633 + -0.1
4,966,633 + +0.6
4,966,633 + +1.6
4,966,634 - -1.2
4,966,667 + -0.2
4,966,667 + +1.1
4,966,667 + +0.3
4,966,686 - -0.2
4,966,849 + -1.7
4,966,849 + -1.9
4,966,849 + -2.2
4,966,849 + -1.4
4,966,850 - -2.4
4,966,850 - -1.7
4,966,850 - -1.7
4,966,852 + -2.9
4,966,852 + -1.7
4,967,136 + AO353_22685 0.33 -1.7
4,967,137 - AO353_22685 0.33 -2.4
4,967,143 - AO353_22685 0.34 -1.4
4,967,211 + AO353_22685 0.41 -3.4
4,967,212 - AO353_22685 0.42 -1.9
4,967,212 - AO353_22685 0.42 -2.7
4,967,237 - AO353_22685 0.44 -3.7
4,967,525 + AO353_22685 0.77 -3.1
4,967,525 + AO353_22685 0.77 -1.9
4,967,525 + AO353_22685 0.77 -0.9
4,967,526 - AO353_22685 0.77 -0.4
4,967,526 - AO353_22685 0.77 -1.4
4,967,669 - -2.8
4,967,669 - -0.9
4,967,669 - -2.2
4,967,671 + +0.6
4,967,671 + -2.2
4,967,671 + -3.6
4,967,671 + -2.4
4,967,671 + -0.4
4,967,672 - -2.4
4,967,672 - -2.8
4,967,672 - -1.9
4,967,672 - -1.9
4,967,736 - +0.1
4,967,750 - +0.6
4,967,788 + -0.9
4,967,788 + +2.0
4,967,789 - +0.3
4,967,797 + +1.2
4,967,797 + +0.1
4,967,797 + -1.3
4,967,798 - -0.1
4,967,798 - -0.9
4,967,798 - +0.4
4,967,825 + +1.1
4,967,854 + +1.1
4,967,854 + +0.4
4,967,872 + -0.4
4,967,872 + +0.2
4,967,872 + +2.1
4,967,872 + +1.2
4,967,872 + -1.8
4,967,872 + +0.1
4,967,872 + +1.1
4,967,873 - -1.9
4,968,040 + AO353_22690 0.11 -0.9
4,968,040 + AO353_22690 0.11 +0.4
4,968,041 - AO353_22690 0.11 +0.8
4,968,046 + AO353_22690 0.11 -1.1
4,968,046 + AO353_22690 0.11 +3.0
4,968,046 + AO353_22690 0.11 -0.9
4,968,046 + AO353_22690 0.11 -1.0
4,968,046 + AO353_22690 0.11 -0.2
4,968,046 + AO353_22690 0.11 -0.4
4,968,046 + AO353_22690 0.11 -2.2
4,968,047 - AO353_22690 0.11 +0.8
4,968,087 + AO353_22690 0.13 -1.1
4,968,088 - AO353_22690 0.13 -0.2
4,968,266 - AO353_22690 0.24 -2.3
4,968,266 - AO353_22690 0.24 +2.0
4,968,266 - AO353_22690 0.24 +0.2
4,968,266 - AO353_22690 0.24 -1.1
4,968,266 - AO353_22690 0.24 +0.9
4,968,266 - AO353_22690 0.24 +1.8
4,968,266 - +0.6
4,968,550 + AO353_22690 0.40 -1.2
4,968,550 + AO353_22690 0.40 +0.6
4,968,550 + AO353_22690 0.40 -0.4

Or see this region's nucleotide sequence