Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16065 and AO353_16070 overlap by 4 nucleotides
AO353_16065: AO353_16065 - FAD-binding protein, at 3,554,952 to 3,555,737
_16065
AO353_16070: AO353_16070 - PadR family transcriptional regulator, at 3,555,734 to 3,556,312
_16070
Position (kb)
3554
3555
3556 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3554.318 kb on + strand at 3554.350 kb on - strand at 3554.350 kb on - strand at 3554.350 kb on - strand at 3554.350 kb on - strand at 3554.688 kb on + strand at 3554.953 kb on + strand at 3554.953 kb on + strand at 3555.082 kb on + strand, within AO353_16065 at 3555.082 kb on + strand, within AO353_16065 at 3555.082 kb on + strand, within AO353_16065 at 3555.082 kb on + strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.083 kb on - strand, within AO353_16065 at 3555.307 kb on + strand, within AO353_16065 at 3555.307 kb on + strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.308 kb on - strand, within AO353_16065 at 3555.420 kb on + strand, within AO353_16065 at 3555.420 kb on + strand, within AO353_16065 at 3555.420 kb on + strand, within AO353_16065 at 3555.420 kb on + strand, within AO353_16065 at 3555.421 kb on - strand, within AO353_16065 at 3555.421 kb on - strand, within AO353_16065 at 3555.421 kb on - strand, within AO353_16065 at 3555.472 kb on + strand, within AO353_16065 at 3555.473 kb on - strand, within AO353_16065 at 3555.473 kb on - strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.573 kb on + strand, within AO353_16065 at 3555.574 kb on - strand, within AO353_16065 at 3555.574 kb on - strand, within AO353_16065 at 3555.574 kb on - strand, within AO353_16065 at 3555.574 kb on - strand, within AO353_16065 at 3555.980 kb on + strand, within AO353_16070 at 3556.011 kb on + strand, within AO353_16070 at 3556.012 kb on - strand, within AO353_16070 at 3556.012 kb on - strand, within AO353_16070 at 3556.012 kb on - strand, within AO353_16070 at 3556.012 kb on - strand, within AO353_16070 at 3556.080 kb on + strand, within AO353_16070 at 3556.080 kb on + strand, within AO353_16070 at 3556.081 kb on - strand, within AO353_16070 at 3556.081 kb on - strand, within AO353_16070 at 3556.104 kb on + strand, within AO353_16070 at 3556.146 kb on + strand, within AO353_16070 at 3556.338 kb on - strand at 3556.361 kb on - strand at 3556.421 kb on - strand at 3556.466 kb on - strand at 3556.519 kb on + strand at 3556.524 kb on - strand at 3556.591 kb on + strand at 3556.592 kb on - strand at 3556.606 kb on - strand at 3556.663 kb on - strand at 3556.665 kb on + strand at 3556.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 3,554,318 + -0.1 3,554,350 - +0.4 3,554,350 - -0.1 3,554,350 - +1.1 3,554,350 - -1.3 3,554,688 + -0.8 3,554,953 + -1.5 3,554,953 + -0.2 3,555,082 + AO353_16065 0.17 +0.5 3,555,082 + AO353_16065 0.17 -0.2 3,555,082 + AO353_16065 0.17 -1.2 3,555,082 + AO353_16065 0.17 +0.7 3,555,083 - AO353_16065 0.17 +0.3 3,555,083 - AO353_16065 0.17 -2.7 3,555,083 - AO353_16065 0.17 -2.5 3,555,083 - AO353_16065 0.17 -1.5 3,555,083 - AO353_16065 0.17 -0.2 3,555,083 - AO353_16065 0.17 +2.4 3,555,083 - AO353_16065 0.17 -0.7 3,555,083 - AO353_16065 0.17 -1.4 3,555,083 - AO353_16065 0.17 -0.5 3,555,083 - AO353_16065 0.17 +1.1 3,555,307 + AO353_16065 0.45 -0.2 3,555,307 + AO353_16065 0.45 +1.1 3,555,308 - AO353_16065 0.45 +0.8 3,555,308 - AO353_16065 0.45 -1.3 3,555,308 - AO353_16065 0.45 +0.7 3,555,308 - AO353_16065 0.45 +1.0 3,555,308 - AO353_16065 0.45 +0.3 3,555,308 - AO353_16065 0.45 +0.5 3,555,420 + AO353_16065 0.60 -0.2 3,555,420 + AO353_16065 0.60 +1.1 3,555,420 + AO353_16065 0.60 -1.2 3,555,420 + AO353_16065 0.60 +0.5 3,555,421 - AO353_16065 0.60 -0.5 3,555,421 - AO353_16065 0.60 +1.1 3,555,421 - AO353_16065 0.60 +0.8 3,555,472 + AO353_16065 0.66 -0.9 3,555,473 - AO353_16065 0.66 -0.6 3,555,473 - AO353_16065 0.66 +0.8 3,555,573 + AO353_16065 0.79 +2.1 3,555,573 + AO353_16065 0.79 -2.4 3,555,573 + AO353_16065 0.79 +0.7 3,555,573 + AO353_16065 0.79 -1.5 3,555,573 + AO353_16065 0.79 +0.3 3,555,573 + AO353_16065 0.79 +0.5 3,555,574 - AO353_16065 0.79 -0.2 3,555,574 - AO353_16065 0.79 +0.7 3,555,574 - AO353_16065 0.79 -2.4 3,555,574 - AO353_16065 0.79 -1.2 3,555,980 + AO353_16070 0.42 -0.6 3,556,011 + AO353_16070 0.48 +1.5 3,556,012 - AO353_16070 0.48 +0.5 3,556,012 - AO353_16070 0.48 -0.8 3,556,012 - AO353_16070 0.48 +0.7 3,556,012 - AO353_16070 0.48 -0.1 3,556,080 + AO353_16070 0.60 -0.1 3,556,080 + AO353_16070 0.60 +1.1 3,556,081 - AO353_16070 0.60 -0.1 3,556,081 - AO353_16070 0.60 -2.6 3,556,104 + AO353_16070 0.64 -1.9 3,556,146 + AO353_16070 0.71 -0.2 3,556,338 - -0.0 3,556,361 - +0.8 3,556,421 - +0.1 3,556,466 - +1.5 3,556,519 + -0.2 3,556,524 - +0.6 3,556,591 + -0.9 3,556,592 - -0.9 3,556,606 - +1.7 3,556,663 - -0.2 3,556,665 + +0.8 3,556,688 - -0.2
Or see this region's nucleotide sequence