Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06045 and AO353_06050 overlap by 4 nucleotides AO353_06050 and AO353_06055 are separated by 154 nucleotides AO353_06055 and AO353_06060 are separated by 146 nucleotides
AO353_06045: AO353_06045 - exodeoxyribonuclease V subunit beta, at 1,342,697 to 1,346,386
_06045
AO353_06050: AO353_06050 - exodeoxyribonuclease V subunit gamma, at 1,346,383 to 1,349,835
_06050
AO353_06055: AO353_06055 - 5S ribosomal RNA, at 1,349,990 to 1,350,105
_06055
AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164
_06060
Position (kb)
1346
1347
1348
1349
1350 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1345.561 kb on + strand, within AO353_06045 at 1345.590 kb on + strand, within AO353_06045 at 1346.284 kb on - strand at 1346.361 kb on - strand at 1346.492 kb on + strand at 1346.492 kb on + strand at 1346.659 kb on - strand at 1346.736 kb on + strand, within AO353_06050 at 1346.736 kb on + strand, within AO353_06050 at 1347.333 kb on - strand, within AO353_06050 at 1347.333 kb on - strand, within AO353_06050 at 1347.333 kb on - strand, within AO353_06050 at 1347.402 kb on - strand, within AO353_06050 at 1347.402 kb on - strand, within AO353_06050 at 1347.402 kb on - strand, within AO353_06050 at 1347.602 kb on + strand, within AO353_06050 at 1347.603 kb on - strand, within AO353_06050 at 1347.603 kb on - strand, within AO353_06050 at 1347.603 kb on - strand, within AO353_06050 at 1347.640 kb on + strand, within AO353_06050 at 1347.640 kb on + strand, within AO353_06050 at 1347.798 kb on + strand, within AO353_06050 at 1347.965 kb on + strand, within AO353_06050 at 1348.139 kb on + strand, within AO353_06050 at 1348.140 kb on - strand, within AO353_06050 at 1348.438 kb on + strand, within AO353_06050 at 1348.541 kb on + strand, within AO353_06050 at 1348.735 kb on + strand, within AO353_06050 at 1348.796 kb on - strand, within AO353_06050 at 1348.796 kb on - strand, within AO353_06050 at 1348.796 kb on - strand, within AO353_06050 at 1348.830 kb on - strand, within AO353_06050 at 1348.847 kb on + strand, within AO353_06050 at 1348.848 kb on - strand, within AO353_06050 at 1348.868 kb on + strand, within AO353_06050 at 1348.869 kb on - strand, within AO353_06050 at 1348.939 kb on + strand, within AO353_06050 at 1348.976 kb on + strand, within AO353_06050 at 1349.037 kb on + strand, within AO353_06050 at 1349.140 kb on + strand, within AO353_06050 at 1349.141 kb on - strand, within AO353_06050 at 1349.415 kb on + strand, within AO353_06050 at 1349.803 kb on - strand at 1349.803 kb on - strand at 1349.803 kb on - strand at 1349.803 kb on - strand at 1349.864 kb on + strand at 1349.864 kb on + strand at 1349.865 kb on - strand at 1349.865 kb on - strand at 1349.877 kb on + strand at 1349.877 kb on + strand at 1349.925 kb on + strand at 1349.925 kb on + strand at 1349.925 kb on + strand at 1349.926 kb on - strand at 1349.926 kb on - strand at 1349.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 1,345,561 + AO353_06045 0.78 -0.8 1,345,590 + AO353_06045 0.78 -1.1 1,346,284 - -0.8 1,346,361 - -2.6 1,346,492 + -1.8 1,346,492 + -1.6 1,346,659 - -0.4 1,346,736 + AO353_06050 0.10 -0.8 1,346,736 + AO353_06050 0.10 -0.8 1,347,333 - AO353_06050 0.28 -1.8 1,347,333 - AO353_06050 0.28 -1.1 1,347,333 - AO353_06050 0.28 +0.6 1,347,402 - AO353_06050 0.30 +3.0 1,347,402 - AO353_06050 0.30 -0.4 1,347,402 - AO353_06050 0.30 +0.2 1,347,602 + AO353_06050 0.35 -0.8 1,347,603 - AO353_06050 0.35 +1.6 1,347,603 - AO353_06050 0.35 -2.8 1,347,603 - AO353_06050 0.35 -2.4 1,347,640 + AO353_06050 0.36 -0.8 1,347,640 + AO353_06050 0.36 -1.1 1,347,798 + AO353_06050 0.41 -0.5 1,347,965 + AO353_06050 0.46 -2.2 1,348,139 + AO353_06050 0.51 -0.4 1,348,140 - AO353_06050 0.51 +0.9 1,348,438 + AO353_06050 0.60 -0.5 1,348,541 + AO353_06050 0.62 +1.2 1,348,735 + AO353_06050 0.68 +1.2 1,348,796 - AO353_06050 0.70 +0.6 1,348,796 - AO353_06050 0.70 -2.2 1,348,796 - AO353_06050 0.70 -1.1 1,348,830 - AO353_06050 0.71 -2.2 1,348,847 + AO353_06050 0.71 -1.4 1,348,848 - AO353_06050 0.71 -1.1 1,348,868 + AO353_06050 0.72 +1.2 1,348,869 - AO353_06050 0.72 +0.2 1,348,939 + AO353_06050 0.74 -1.1 1,348,976 + AO353_06050 0.75 -0.4 1,349,037 + AO353_06050 0.77 -1.6 1,349,140 + AO353_06050 0.80 -1.6 1,349,141 - AO353_06050 0.80 +1.2 1,349,415 + AO353_06050 0.88 -0.6 1,349,803 - -0.3 1,349,803 - -0.5 1,349,803 - -1.0 1,349,803 - +0.5 1,349,864 + +0.6 1,349,864 + +0.7 1,349,865 - +0.1 1,349,865 - +0.9 1,349,877 + +0.8 1,349,877 + -1.1 1,349,925 + +0.1 1,349,925 + +0.2 1,349,925 + -0.2 1,349,926 - +2.5 1,349,926 - +0.3 1,349,926 - -0.6
Or see this region's nucleotide sequence