Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05660 and AO353_05665 are separated by 75 nucleotides AO353_05665 and AO353_05670 are separated by 97 nucleotides AO353_05670 and AO353_05675 are separated by 60 nucleotides
AO353_05660: AO353_05660 - DNA repair protein RecN, at 1,251,619 to 1,253,292
_05660
AO353_05665: AO353_05665 - Fur family transcriptional regulator, at 1,253,368 to 1,253,772
_05665
AO353_05670: AO353_05670 - hypothetical protein, at 1,253,870 to 1,254,397
_05670
AO353_05675: AO353_05675 - protein RnfH, at 1,254,458 to 1,254,775
_05675
AO353_05680: AO353_05680 - ribosome association toxin RatA, at 1,254,768 to 1,255,202
_05680
Position (kb)
1253
1254 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1252.543 kb on + strand, within AO353_05660 at 1252.543 kb on + strand, within AO353_05660 at 1252.543 kb on + strand, within AO353_05660 at 1252.543 kb on + strand, within AO353_05660 at 1252.544 kb on - strand, within AO353_05660 at 1252.544 kb on - strand, within AO353_05660 at 1252.544 kb on - strand, within AO353_05660 at 1252.544 kb on - strand, within AO353_05660 at 1252.544 kb on - strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1252.808 kb on + strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.106 kb on - strand, within AO353_05660 at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.129 kb on + strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.130 kb on - strand at 1253.188 kb on - strand at 1253.199 kb on + strand at 1253.200 kb on - strand at 1253.200 kb on - strand at 1253.200 kb on - strand at 1253.200 kb on - strand at 1253.369 kb on + strand at 1253.369 kb on + strand at 1253.369 kb on + strand at 1253.369 kb on + strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1253.370 kb on - strand at 1254.395 kb on + strand at 1254.396 kb on - strand at 1254.396 kb on - strand at 1254.460 kb on - strand at 1254.503 kb on + strand, within AO353_05675 at 1254.503 kb on + strand, within AO353_05675 at 1254.504 kb on - strand, within AO353_05675 at 1254.544 kb on - strand, within AO353_05675 at 1254.544 kb on - strand, within AO353_05675 at 1254.688 kb on + strand, within AO353_05675 at 1254.688 kb on + strand, within AO353_05675 at 1254.689 kb on - strand, within AO353_05675 at 1254.689 kb on - strand, within AO353_05675 at 1254.689 kb on - strand, within AO353_05675 at 1254.689 kb on - strand, within AO353_05675 at 1254.689 kb on - strand, within AO353_05675 at 1254.695 kb on + strand, within AO353_05675 at 1254.695 kb on + strand at 1254.696 kb on - strand, within AO353_05675 at 1254.741 kb on + strand, within AO353_05675 at 1254.741 kb on + strand, within AO353_05675 at 1254.741 kb on + strand, within AO353_05675 at 1254.741 kb on + strand, within AO353_05675 at 1254.741 kb on + strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.742 kb on - strand, within AO353_05675 at 1254.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 1,252,543 + AO353_05660 0.55 -0.3 1,252,543 + AO353_05660 0.55 +1.6 1,252,543 + AO353_05660 0.55 +1.6 1,252,543 + AO353_05660 0.55 -1.1 1,252,544 - AO353_05660 0.55 -1.1 1,252,544 - AO353_05660 0.55 -0.9 1,252,544 - AO353_05660 0.55 -0.2 1,252,544 - AO353_05660 0.55 -2.5 1,252,544 - AO353_05660 0.55 +1.6 1,252,808 + AO353_05660 0.71 +0.2 1,252,808 + AO353_05660 0.71 -0.4 1,252,808 + AO353_05660 0.71 +0.0 1,252,808 + AO353_05660 0.71 +1.2 1,252,808 + AO353_05660 0.71 +0.2 1,252,808 + AO353_05660 0.71 -0.6 1,253,106 - AO353_05660 0.89 -0.1 1,253,106 - AO353_05660 0.89 -2.4 1,253,106 - AO353_05660 0.89 +0.4 1,253,106 - AO353_05660 0.89 -0.4 1,253,106 - AO353_05660 0.89 -0.4 1,253,106 - AO353_05660 0.89 +0.8 1,253,106 - AO353_05660 0.89 +0.1 1,253,129 + -0.8 1,253,129 + +1.2 1,253,129 + -0.1 1,253,129 + +1.4 1,253,129 + +0.6 1,253,129 + -0.9 1,253,129 + -1.3 1,253,129 + -0.4 1,253,129 + -0.1 1,253,129 + +0.6 1,253,129 + +1.2 1,253,130 - -0.4 1,253,130 - -0.1 1,253,130 - +0.6 1,253,130 - +0.5 1,253,130 - -1.4 1,253,130 - -1.1 1,253,130 - +1.2 1,253,130 - -1.2 1,253,130 - -0.2 1,253,130 - -1.4 1,253,130 - +3.5 1,253,188 - -0.6 1,253,199 + -1.4 1,253,200 - -2.1 1,253,200 - +0.2 1,253,200 - +0.4 1,253,200 - +0.9 1,253,369 + +0.9 1,253,369 + +0.2 1,253,369 + +1.7 1,253,369 + -2.0 1,253,370 - -0.1 1,253,370 - +0.8 1,253,370 - +0.8 1,253,370 - +0.4 1,253,370 - -0.1 1,253,370 - +1.5 1,253,370 - -0.4 1,253,370 - +0.2 1,253,370 - -1.3 1,254,395 + -1.6 1,254,396 - +0.6 1,254,396 - +1.9 1,254,460 - +0.4 1,254,503 + AO353_05675 0.14 +0.7 1,254,503 + AO353_05675 0.14 +1.2 1,254,504 - AO353_05675 0.14 -0.2 1,254,544 - AO353_05675 0.27 +0.3 1,254,544 - AO353_05675 0.27 -1.1 1,254,688 + AO353_05675 0.72 -1.1 1,254,688 + AO353_05675 0.72 -0.8 1,254,689 - AO353_05675 0.73 +0.3 1,254,689 - AO353_05675 0.73 -2.3 1,254,689 - AO353_05675 0.73 +0.2 1,254,689 - AO353_05675 0.73 +0.4 1,254,689 - AO353_05675 0.73 -1.1 1,254,695 + AO353_05675 0.75 +1.8 1,254,695 + -1.1 1,254,696 - AO353_05675 0.75 -0.6 1,254,741 + AO353_05675 0.89 -2.1 1,254,741 + AO353_05675 0.89 +1.2 1,254,741 + AO353_05675 0.89 -1.1 1,254,741 + AO353_05675 0.89 -0.5 1,254,741 + AO353_05675 0.89 -1.6 1,254,742 - AO353_05675 0.89 +0.3 1,254,742 - AO353_05675 0.89 -0.1 1,254,742 - AO353_05675 0.89 -0.8 1,254,742 - AO353_05675 0.89 -1.4 1,254,742 - AO353_05675 0.89 +1.7 1,254,742 - AO353_05675 0.89 +0.6 1,254,742 - AO353_05675 0.89 +1.2 1,254,742 - AO353_05675 0.89 -0.4 1,254,742 - AO353_05675 0.89 -0.6 1,254,769 + -0.8
Or see this region's nucleotide sequence