Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02815

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02810 and AO353_02815 overlap by 4 nucleotidesAO353_02815 and AO353_02820 are separated by 239 nucleotides AO353_02810: AO353_02810 - histidine kinase, at 595,696 to 597,042 _02810 AO353_02815: AO353_02815 - transcriptional regulator, at 597,039 to 597,716 _02815 AO353_02820: AO353_02820 - dienelactone hydrolase, at 597,956 to 598,747 _02820 Position (kb) 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 596.148 kb on + strand, within AO353_02810at 596.148 kb on + strand, within AO353_02810at 596.149 kb on - strand, within AO353_02810at 596.175 kb on - strand, within AO353_02810at 596.543 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.579 kb on + strand, within AO353_02810at 596.607 kb on + strand, within AO353_02810at 596.626 kb on - strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.654 kb on + strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.655 kb on - strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.789 kb on + strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.790 kb on - strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.795 kb on + strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.796 kb on - strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 596.887 kb on + strand, within AO353_02810at 597.064 kb on + strandat 597.064 kb on + strandat 597.065 kb on - strandat 597.238 kb on + strand, within AO353_02815at 597.238 kb on + strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.239 kb on - strand, within AO353_02815at 597.260 kb on - strand, within AO353_02815at 597.350 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.424 kb on + strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strandat 597.425 kb on - strand, within AO353_02815at 597.425 kb on - strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.604 kb on + strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strand, within AO353_02815at 597.605 kb on - strandat 597.605 kb on - strand, within AO353_02815at 597.752 kb on + strandat 597.752 kb on + strandat 597.753 kb on - strandat 597.753 kb on - strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.771 kb on + strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.772 kb on - strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.774 kb on + strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.775 kb on - strandat 597.852 kb on + strandat 597.853 kb on - strandat 597.853 kb on - strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.876 kb on + strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.877 kb on - strandat 597.882 kb on - strandat 597.920 kb on + strandat 597.920 kb on + strandat 597.921 kb on - strandat 597.940 kb on + strandat 597.940 kb on + strandat 597.941 kb on - strandat 597.941 kb on - strandat 597.963 kb on + strandat 597.964 kb on - strandat 597.981 kb on + strandat 597.981 kb on + strandat 597.982 kb on - strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.034 kb on + strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.035 kb on - strandat 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.067 kb on + strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.068 kb on - strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.070 kb on + strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.071 kb on - strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.076 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.145 kb on + strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.146 kb on - strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.204 kb on + strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.205 kb on - strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.208 kb on + strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.209 kb on - strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.446 kb on + strand, within AO353_02820at 598.447 kb on - strand, within AO353_02820at 598.494 kb on + strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.495 kb on - strand, within AO353_02820at 598.500 kb on + strand, within AO353_02820at 598.501 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.584 kb on - strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.585 kb on + strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.586 kb on - strand, within AO353_02820at 598.679 kb on + strandat 598.679 kb on + strandat 598.680 kb on - strandat 598.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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596,148 + AO353_02810 0.34 -1.4
596,148 + AO353_02810 0.34 -0.6
596,149 - AO353_02810 0.34 -0.0
596,175 - AO353_02810 0.36 +1.3
596,543 + AO353_02810 0.63 -0.7
596,579 + AO353_02810 0.66 -1.0
596,579 + AO353_02810 0.66 +0.8
596,607 + AO353_02810 0.68 -0.9
596,626 - AO353_02810 0.69 +1.3
596,654 + AO353_02810 0.71 +1.8
596,654 + AO353_02810 0.71 -0.0
596,654 + AO353_02810 0.71 -1.4
596,654 + AO353_02810 0.71 +1.5
596,655 - AO353_02810 0.71 -2.2
596,655 - AO353_02810 0.71 -0.6
596,789 + AO353_02810 0.81 +0.2
596,789 + AO353_02810 0.81 -1.8
596,789 + AO353_02810 0.81 +1.2
596,789 + AO353_02810 0.81 -0.5
596,789 + AO353_02810 0.81 +0.2
596,789 + AO353_02810 0.81 +0.5
596,789 + AO353_02810 0.81 -0.5
596,789 + AO353_02810 0.81 -0.4
596,789 + AO353_02810 0.81 -2.1
596,790 - AO353_02810 0.81 +0.4
596,790 - AO353_02810 0.81 +0.7
596,790 - AO353_02810 0.81 -2.6
596,790 - AO353_02810 0.81 +1.8
596,795 + AO353_02810 0.82 -0.0
596,795 + AO353_02810 0.82 -0.6
596,795 + AO353_02810 0.82 +2.5
596,795 + AO353_02810 0.82 +0.6
596,795 + AO353_02810 0.82 -0.5
596,796 - AO353_02810 0.82 -1.6
596,796 - AO353_02810 0.82 +0.5
596,796 - AO353_02810 0.82 +1.3
596,887 + AO353_02810 0.88 +1.4
596,887 + AO353_02810 0.88 +1.1
597,064 + -2.0
597,064 + -1.0
597,065 - -0.0
597,238 + AO353_02815 0.29 -2.2
597,238 + AO353_02815 0.29 -1.6
597,239 - AO353_02815 0.29 +0.0
597,239 - AO353_02815 0.29 -1.8
597,239 - AO353_02815 0.29 -0.7
597,260 - AO353_02815 0.33 -1.6
597,350 + AO353_02815 0.46 -2.5
597,424 + AO353_02815 0.57 -0.6
597,424 + AO353_02815 0.57 -1.4
597,424 + AO353_02815 0.57 -1.8
597,425 - AO353_02815 0.57 -0.6
597,425 - +1.0
597,425 - AO353_02815 0.57 -1.0
597,425 - AO353_02815 0.57 -2.4
597,604 + AO353_02815 0.83 -1.0
597,604 + AO353_02815 0.83 -0.4
597,604 + AO353_02815 0.83 -0.0
597,605 - AO353_02815 0.83 -0.6
597,605 - AO353_02815 0.83 -0.6
597,605 - +1.4
597,605 - AO353_02815 0.83 -1.9
597,752 + -2.0
597,752 + -1.6
597,753 - +1.5
597,753 - -0.4
597,771 + +0.4
597,771 + +1.0
597,771 + -0.4
597,771 + -1.5
597,771 + +0.8
597,772 - -1.0
597,772 - +0.5
597,772 - +2.0
597,772 - +0.4
597,774 + -0.8
597,774 + +1.0
597,774 + +2.0
597,774 + -0.8
597,775 - +2.0
597,775 - -2.2
597,775 - -1.6
597,852 + -0.3
597,853 - +0.7
597,853 - -0.5
597,876 + -0.8
597,876 + -0.9
597,876 + -1.3
597,876 + -0.6
597,876 + -1.6
597,876 + -0.0
597,876 + +1.7
597,876 + -1.4
597,876 + -0.8
597,876 + -1.0
597,876 + -0.5
597,876 + -0.0
597,876 + -1.0
597,877 - -0.0
597,877 - -2.5
597,877 - +0.7
597,877 - -0.4
597,877 - -0.4
597,877 - -2.0
597,877 - +0.1
597,877 - +0.2
597,877 - -0.9
597,877 - -1.4
597,877 - -0.0
597,877 - -0.3
597,882 - -0.6
597,920 + -1.3
597,920 + -1.0
597,921 - -0.1
597,940 + +0.1
597,940 + +1.0
597,941 - -0.6
597,941 - +2.3
597,963 + -0.9
597,964 - +0.5
597,981 + +0.6
597,981 + -1.6
597,982 - -0.5
598,034 + +1.0
598,034 + -0.6
598,034 + -0.0
598,034 + -0.0
598,035 - -0.3
598,035 - -0.2
598,035 - +0.1
598,067 + AO353_02820 0.14 -0.6
598,067 + AO353_02820 0.14 +0.4
598,067 + AO353_02820 0.14 +2.4
598,068 - AO353_02820 0.14 +1.7
598,068 - AO353_02820 0.14 +0.0
598,070 + AO353_02820 0.14 +2.0
598,070 + AO353_02820 0.14 -0.4
598,070 + AO353_02820 0.14 -1.0
598,071 - AO353_02820 0.15 +1.0
598,071 - AO353_02820 0.15 -0.0
598,071 - AO353_02820 0.15 -1.9
598,071 - AO353_02820 0.15 +1.2
598,076 + AO353_02820 0.15 -1.4
598,076 + AO353_02820 0.15 +2.0
598,145 + AO353_02820 0.24 +0.5
598,145 + AO353_02820 0.24 +0.4
598,146 - AO353_02820 0.24 -1.5
598,146 - AO353_02820 0.24 +0.1
598,204 + AO353_02820 0.31 -0.9
598,204 + AO353_02820 0.31 +1.7
598,204 + AO353_02820 0.31 +1.4
598,204 + AO353_02820 0.31 +0.7
598,204 + AO353_02820 0.31 +2.8
598,204 + AO353_02820 0.31 +0.0
598,204 + AO353_02820 0.31 -2.6
598,204 + AO353_02820 0.31 -0.0
598,205 - AO353_02820 0.31 -0.3
598,205 - AO353_02820 0.31 -1.5
598,205 - AO353_02820 0.31 +0.5
598,205 - AO353_02820 0.31 +0.3
598,205 - AO353_02820 0.31 -1.7
598,205 - AO353_02820 0.31 +2.0
598,208 + AO353_02820 0.32 -0.3
598,208 + AO353_02820 0.32 -1.6
598,208 + AO353_02820 0.32 +0.4
598,208 + AO353_02820 0.32 +0.7
598,208 + AO353_02820 0.32 +0.4
598,208 + AO353_02820 0.32 -2.2
598,208 + AO353_02820 0.32 +0.8
598,208 + AO353_02820 0.32 -0.6
598,209 - AO353_02820 0.32 -1.2
598,209 - AO353_02820 0.32 -0.4
598,209 - AO353_02820 0.32 +0.5
598,209 - AO353_02820 0.32 -0.0
598,209 - AO353_02820 0.32 -0.2
598,209 - AO353_02820 0.32 -1.2
598,209 - AO353_02820 0.32 -0.0
598,209 - AO353_02820 0.32 -1.3
598,209 - AO353_02820 0.32 -3.0
598,209 - AO353_02820 0.32 -0.6
598,209 - AO353_02820 0.32 -0.0
598,209 - AO353_02820 0.32 +0.1
598,209 - AO353_02820 0.32 -0.6
598,209 - AO353_02820 0.32 +0.5
598,209 - AO353_02820 0.32 +3.5
598,446 + AO353_02820 0.62 +0.4
598,446 + AO353_02820 0.62 -1.0
598,447 - AO353_02820 0.62 -1.2
598,494 + AO353_02820 0.68 -0.9
598,495 - AO353_02820 0.68 +1.0
598,495 - AO353_02820 0.68 -0.5
598,495 - AO353_02820 0.68 -0.0
598,500 + AO353_02820 0.69 -1.1
598,501 - AO353_02820 0.69 +1.2
598,584 - AO353_02820 0.79 -1.6
598,584 - AO353_02820 0.79 -0.0
598,584 - AO353_02820 0.79 -0.0
598,584 - AO353_02820 0.79 -2.2
598,584 - AO353_02820 0.79 -0.0
598,584 - AO353_02820 0.79 -0.3
598,584 - AO353_02820 0.79 -1.4
598,585 + AO353_02820 0.79 -0.2
598,585 + AO353_02820 0.79 -0.5
598,585 + AO353_02820 0.79 -1.0
598,585 + AO353_02820 0.79 +0.3
598,585 + AO353_02820 0.79 +0.1
598,585 + AO353_02820 0.79 +1.1
598,585 + AO353_02820 0.79 -1.0
598,585 + AO353_02820 0.79 +1.2
598,585 + AO353_02820 0.79 -0.5
598,585 + AO353_02820 0.79 -1.4
598,586 - AO353_02820 0.80 +2.0
598,586 - AO353_02820 0.80 -0.0
598,586 - AO353_02820 0.80 -0.0
598,586 - AO353_02820 0.80 -1.6
598,586 - AO353_02820 0.80 -1.4
598,586 - AO353_02820 0.80 -1.4
598,679 + +0.2
598,679 + -1.9
598,680 - -2.2
598,680 - -2.1

Or see this region's nucleotide sequence