Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02455 and AO353_02460 are separated by 229 nucleotides AO353_02460 and AO353_02465 are separated by 0 nucleotides AO353_02465 and AO353_02470 overlap by 4 nucleotides AO353_02470 and AO353_02475 are separated by 115 nucleotides AO353_02475 and AO353_02480 are separated by 293 nucleotides
AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595
_02455
AO353_02460: AO353_02460 - hypothetical protein, at 528,825 to 529,226
_02460
AO353_02465: AO353_02465 - hypothetical protein, at 529,227 to 529,598
_02465
AO353_02470: AO353_02470 - Cro/Cl family transcriptional regulator, at 529,595 to 529,936
_02470
AO353_02475: AO353_02475 - hypothetical protein, at 530,052 to 530,507
_02475
AO353_02480: AO353_02480 - peptidylprolyl isomerase, at 530,801 to 531,514
_02480
Position (kb) 529
530 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.765 kb on + strand at 528.766 kb on - strand at 528.766 kb on - strand at 528.970 kb on + strand, within AO353_02460 at 529.017 kb on + strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.195 kb on + strand at 529.195 kb on + strand at 529.255 kb on + strand at 529.256 kb on - strand at 529.513 kb on + strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.590 kb on + strand at 529.591 kb on - strand at 529.695 kb on + strand, within AO353_02470 at 529.695 kb on + strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.766 kb on + strand, within AO353_02470 at 529.766 kb on + strand at 529.766 kb on + strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.872 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.887 kb on - strand, within AO353_02470 at 529.896 kb on + strand, within AO353_02470 at 529.897 kb on - strand, within AO353_02470 at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.923 kb on - strand at 529.930 kb on + strand at 529.940 kb on + strand at 529.940 kb on + strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.948 kb on - strand at 529.962 kb on + strand at 529.963 kb on - strand at 529.984 kb on - strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.992 kb on - strand at 529.998 kb on - strand at 529.998 kb on - strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.290 kb on - strand, within AO353_02475 at 530.321 kb on - strand, within AO353_02475 at 530.336 kb on - strand, within AO353_02475 at 530.375 kb on + strand, within AO353_02475 at 530.376 kb on - strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.475 kb on + strand at 530.592 kb on + strand at 530.593 kb on - strand at 530.644 kb on + strand at 530.645 kb on - strand at 530.665 kb on + strand at 530.665 kb on + strand at 530.665 kb on + strand at 530.666 kb on - strand at 530.674 kb on + strand at 530.786 kb on + strand at 530.787 kb on - strand at 530.787 kb on - strand at 530.788 kb on + strand at 530.789 kb on - strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.802 kb on + strand at 530.803 kb on - strand at 530.803 kb on - strand at 530.858 kb on + strand at 530.858 kb on + strand at 530.907 kb on + strand, within AO353_02480 at 530.907 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.928 kb on + strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480 at 530.929 kb on - strand, within AO353_02480
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 528,681 + -0.1 528,681 + -0.1 528,681 + -0.6 528,681 + +2.9 528,681 + -0.3 528,681 + -0.6 528,681 + -0.5 528,681 + -1.2 528,682 - -0.6 528,682 - -0.1 528,682 - +0.9 528,682 - +0.3 528,682 - -0.9 528,686 + -0.1 528,686 + -0.3 528,686 + -0.2 528,687 - +0.9 528,687 - -1.4 528,687 - +0.7 528,748 + -2.4 528,748 + -0.2 528,749 - -0.1 528,749 - +0.9 528,749 - -0.6 528,749 - -1.3 528,753 + -0.3 528,753 + -1.6 528,753 + -1.1 528,754 - +0.1 528,754 - -0.6 528,754 - -0.8 528,765 + -0.6 528,766 - -0.1 528,766 - +0.3 528,970 + AO353_02460 0.36 -0.5 529,017 + AO353_02460 0.48 -0.1 529,018 - AO353_02460 0.48 -1.4 529,018 - AO353_02460 0.48 -0.3 529,018 - AO353_02460 0.48 +0.4 529,018 - AO353_02460 0.48 +1.9 529,018 - AO353_02460 0.48 -0.3 529,072 + AO353_02460 0.61 -0.9 529,072 + AO353_02460 0.61 -0.3 529,072 + AO353_02460 0.61 -0.1 529,072 + AO353_02460 0.61 +1.5 529,072 + AO353_02460 0.61 -2.2 529,072 + AO353_02460 0.61 +0.9 529,072 + AO353_02460 0.61 -0.6 529,072 + AO353_02460 0.61 -0.5 529,073 - AO353_02460 0.62 +0.7 529,073 - AO353_02460 0.62 +0.1 529,073 - AO353_02460 0.62 -0.6 529,073 - AO353_02460 0.62 +1.3 529,073 - AO353_02460 0.62 +1.2 529,195 + -0.3 529,195 + -0.5 529,255 + +0.7 529,256 - +0.9 529,513 + AO353_02465 0.77 -0.5 529,514 - AO353_02465 0.77 +1.9 529,514 - AO353_02465 0.77 +0.5 529,514 - AO353_02465 0.77 +3.0 529,590 + +0.5 529,591 - +1.5 529,695 + AO353_02470 0.29 +0.9 529,695 + AO353_02470 0.29 +0.5 529,696 - AO353_02470 0.30 +2.9 529,696 - AO353_02470 0.30 -0.1 529,766 + AO353_02470 0.50 +0.9 529,766 + +2.3 529,766 + AO353_02470 0.50 +2.5 529,767 - AO353_02470 0.50 +0.6 529,767 - AO353_02470 0.50 -0.9 529,767 - AO353_02470 0.50 -1.6 529,767 - AO353_02470 0.50 +1.4 529,767 - AO353_02470 0.50 +1.9 529,767 - AO353_02470 0.50 +0.4 529,872 + AO353_02470 0.81 +1.1 529,886 + AO353_02470 0.85 -0.2 529,886 + -1.1 529,886 + AO353_02470 0.85 +2.1 529,886 + -1.1 529,886 + AO353_02470 0.85 -1.2 529,886 + AO353_02470 0.85 +0.8 529,887 - AO353_02470 0.85 +0.9 529,896 + AO353_02470 0.88 -0.5 529,897 - AO353_02470 0.88 -2.2 529,922 + -0.5 529,922 + -0.5 529,922 + -0.1 529,922 + +0.8 529,923 - +1.9 529,930 + -0.1 529,940 + -1.9 529,940 + -0.3 529,941 - -1.4 529,941 - +0.9 529,941 - -0.9 529,948 - -0.2 529,962 + +1.7 529,963 - +0.1 529,984 - -2.1 529,991 + +2.9 529,991 + +0.9 529,991 + -2.2 529,991 + -0.1 529,992 - +0.5 529,998 - +0.9 529,998 - -0.2 530,079 + -0.1 530,079 + -0.0 530,079 + -0.4 530,079 + -1.7 530,079 + +0.8 530,080 - -0.1 530,080 - -0.1 530,080 - -1.5 530,234 + AO353_02475 0.40 +0.9 530,234 + AO353_02475 0.40 -2.2 530,234 + AO353_02475 0.40 +1.2 530,269 + AO353_02475 0.48 +0.7 530,269 + AO353_02475 0.48 +0.3 530,269 + AO353_02475 0.48 -1.1 530,269 + AO353_02475 0.48 +3.5 530,269 + AO353_02475 0.48 -0.3 530,269 + AO353_02475 0.48 +1.5 530,270 - AO353_02475 0.48 +0.6 530,270 - AO353_02475 0.48 -0.4 530,270 - AO353_02475 0.48 -1.1 530,270 - AO353_02475 0.48 -0.9 530,270 - AO353_02475 0.48 -0.1 530,270 - AO353_02475 0.48 -0.2 530,270 - AO353_02475 0.48 -1.2 530,270 - AO353_02475 0.48 -0.4 530,290 - AO353_02475 0.52 -1.9 530,321 - AO353_02475 0.59 -0.6 530,336 - AO353_02475 0.62 +0.1 530,375 + AO353_02475 0.71 -0.7 530,376 - AO353_02475 0.71 -1.1 530,430 + AO353_02475 0.83 +0.1 530,430 + AO353_02475 0.83 -0.7 530,475 + +0.3 530,592 + -1.1 530,593 - -0.5 530,644 + +0.6 530,645 - -1.1 530,665 + +1.1 530,665 + -1.0 530,665 + +1.9 530,666 - -1.1 530,674 + +1.9 530,786 + +0.8 530,787 - +0.3 530,787 - +0.9 530,788 + +1.3 530,789 - +1.3 530,802 + +0.3 530,802 + -0.3 530,802 + +0.8 530,802 + -0.7 530,802 + +1.1 530,802 + +0.9 530,802 + +0.2 530,803 - +0.6 530,803 - +0.5 530,858 + -0.1 530,858 + +2.1 530,907 + AO353_02480 0.15 +0.3 530,907 + AO353_02480 0.15 +0.6 530,928 + AO353_02480 0.18 +0.5 530,928 + AO353_02480 0.18 +1.3 530,928 + AO353_02480 0.18 -0.3 530,928 + AO353_02480 0.18 +0.9 530,928 + AO353_02480 0.18 -1.8 530,928 + AO353_02480 0.18 -1.4 530,929 - AO353_02480 0.18 +2.3 530,929 - AO353_02480 0.18 +0.7 530,929 - AO353_02480 0.18 +1.8 530,929 - AO353_02480 0.18 +0.4 530,929 - AO353_02480 0.18 -0.1 530,929 - AO353_02480 0.18 +0.9 530,929 - AO353_02480 0.18 +0.9 530,929 - AO353_02480 0.18 +2.5 530,929 - AO353_02480 0.18 +1.6 530,929 - AO353_02480 0.18 +0.7 530,929 - AO353_02480 0.18 +1.9 530,929 - AO353_02480 0.18 +0.3 530,929 - AO353_02480 0.18 +0.7
Or see this region's nucleotide sequence