Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02420

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02410 and AO353_02415 overlap by 4 nucleotidesAO353_02415 and AO353_02420 overlap by 14 nucleotidesAO353_02420 and AO353_02425 overlap by 4 nucleotides AO353_02410: AO353_02410 - nucleotide pyrophosphatase, at 514,028 to 514,834 _02410 AO353_02415: AO353_02415 - ABC transporter permease, at 514,831 to 515,676 _02415 AO353_02420: AO353_02420 - ABC transporter permease, at 515,663 to 516,463 _02420 AO353_02425: AO353_02425 - spermidine/putrescine ABC transporter ATP-binding protein, at 516,460 to 517,464 _02425 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 514.698 kb on + strand, within AO353_02410at 514.699 kb on - strand, within AO353_02410at 514.699 kb on - strand, within AO353_02410at 514.699 kb on - strand, within AO353_02410at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.005 kb on + strand, within AO353_02415at 515.006 kb on - strand, within AO353_02415at 515.006 kb on - strand, within AO353_02415at 515.006 kb on - strand, within AO353_02415at 515.023 kb on + strand, within AO353_02415at 515.024 kb on - strand, within AO353_02415at 515.024 kb on - strand, within AO353_02415at 515.087 kb on - strand, within AO353_02415at 515.087 kb on - strand, within AO353_02415at 515.241 kb on + strand, within AO353_02415at 515.242 kb on - strand, within AO353_02415at 515.261 kb on - strand, within AO353_02415at 515.261 kb on - strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.287 kb on + strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.288 kb on - strand, within AO353_02415at 515.293 kb on + strand, within AO353_02415at 515.293 kb on + strand, within AO353_02415at 515.293 kb on + strand, within AO353_02415at 515.294 kb on - strand, within AO353_02415at 515.294 kb on - strand, within AO353_02415at 515.294 kb on - strand, within AO353_02415at 515.294 kb on - strand, within AO353_02415at 515.327 kb on - strand, within AO353_02415at 515.424 kb on - strand, within AO353_02415at 515.483 kb on - strand, within AO353_02415at 515.494 kb on + strand, within AO353_02415at 515.494 kb on + strand, within AO353_02415at 515.560 kb on - strand, within AO353_02415at 515.560 kb on - strand, within AO353_02415at 515.659 kb on + strandat 515.659 kb on + strandat 515.659 kb on + strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.660 kb on - strandat 515.696 kb on + strandat 515.697 kb on - strandat 515.697 kb on - strandat 515.714 kb on + strandat 515.715 kb on - strandat 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.763 kb on - strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.822 kb on + strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.823 kb on - strand, within AO353_02420at 515.824 kb on + strand, within AO353_02420at 515.825 kb on - strand, within AO353_02420at 515.942 kb on + strandat 515.943 kb on - strand, within AO353_02420at 515.943 kb on - strand, within AO353_02420at 515.943 kb on - strand, within AO353_02420at 516.038 kb on + strand, within AO353_02420at 516.038 kb on + strand, within AO353_02420at 516.039 kb on - strand, within AO353_02420at 516.039 kb on - strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.092 kb on + strand, within AO353_02420at 516.119 kb on + strand, within AO353_02420at 516.119 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.341 kb on + strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.342 kb on - strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.349 kb on + strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.350 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.359 kb on - strand, within AO353_02420at 516.399 kb on - strandat 516.436 kb on + strandat 516.437 kb on - strandat 516.437 kb on - strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.466 kb on + strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.467 kb on - strandat 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.724 kb on + strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 516.725 kb on - strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.138 kb on + strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.139 kb on - strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.183 kb on + strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.184 kb on - strand, within AO353_02425at 517.457 kb on + strandat 517.457 kb on + strandat 517.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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514,698 + AO353_02410 0.83 +0.6
514,699 - AO353_02410 0.83 -1.1
514,699 - AO353_02410 0.83 +0.1
514,699 - AO353_02410 0.83 -0.1
515,005 + AO353_02415 0.21 +0.7
515,005 + AO353_02415 0.21 +0.6
515,005 + AO353_02415 0.21 +0.5
515,005 + AO353_02415 0.21 -3.0
515,005 + AO353_02415 0.21 +0.9
515,005 + AO353_02415 0.21 -1.1
515,005 + AO353_02415 0.21 -1.7
515,006 - AO353_02415 0.21 +0.9
515,006 - AO353_02415 0.21 +1.4
515,006 - AO353_02415 0.21 -0.1
515,023 + AO353_02415 0.23 -1.9
515,024 - AO353_02415 0.23 -1.9
515,024 - AO353_02415 0.23 -0.3
515,087 - AO353_02415 0.30 -0.3
515,087 - AO353_02415 0.30 -0.3
515,241 + AO353_02415 0.48 -1.9
515,242 - AO353_02415 0.49 +1.5
515,261 - AO353_02415 0.51 +0.3
515,261 - AO353_02415 0.51 -1.7
515,287 + AO353_02415 0.54 +0.5
515,287 + AO353_02415 0.54 -0.9
515,287 + AO353_02415 0.54 +0.8
515,287 + AO353_02415 0.54 +0.0
515,287 + AO353_02415 0.54 +1.0
515,287 + AO353_02415 0.54 -0.4
515,287 + AO353_02415 0.54 +0.5
515,288 - AO353_02415 0.54 +0.3
515,288 - AO353_02415 0.54 -0.1
515,288 - AO353_02415 0.54 -0.7
515,288 - AO353_02415 0.54 -0.7
515,288 - AO353_02415 0.54 +0.9
515,288 - AO353_02415 0.54 -0.9
515,288 - AO353_02415 0.54 +1.5
515,288 - AO353_02415 0.54 -1.2
515,293 + AO353_02415 0.55 +0.3
515,293 + AO353_02415 0.55 -0.7
515,293 + AO353_02415 0.55 -0.1
515,294 - AO353_02415 0.55 +0.9
515,294 - AO353_02415 0.55 -0.3
515,294 - AO353_02415 0.55 +0.4
515,294 - AO353_02415 0.55 +0.9
515,327 - AO353_02415 0.59 -0.9
515,424 - AO353_02415 0.70 -0.7
515,483 - AO353_02415 0.77 -1.4
515,494 + AO353_02415 0.78 -0.3
515,494 + AO353_02415 0.78 +0.7
515,560 - AO353_02415 0.86 +1.1
515,560 - AO353_02415 0.86 -0.7
515,659 + -0.1
515,659 + +0.1
515,659 + +1.3
515,660 - -2.2
515,660 - -1.7
515,660 - +0.6
515,660 - -0.6
515,660 - +0.3
515,660 - -0.1
515,660 - +1.4
515,660 - -2.4
515,660 - -0.2
515,660 - +1.4
515,696 + -0.7
515,697 - -0.7
515,697 - +0.3
515,714 + +1.4
515,715 - -0.5
515,763 - AO353_02420 0.12 -0.6
515,763 - AO353_02420 0.12 +1.2
515,763 - AO353_02420 0.12 -2.2
515,763 - AO353_02420 0.12 -1.9
515,822 + AO353_02420 0.20 +0.5
515,822 + AO353_02420 0.20 +1.2
515,822 + AO353_02420 0.20 -0.1
515,823 - AO353_02420 0.20 +0.2
515,823 - AO353_02420 0.20 -0.7
515,823 - AO353_02420 0.20 -0.5
515,823 - AO353_02420 0.20 +0.9
515,823 - AO353_02420 0.20 +0.9
515,823 - AO353_02420 0.20 +1.7
515,823 - AO353_02420 0.20 -0.1
515,824 + AO353_02420 0.20 -0.4
515,825 - AO353_02420 0.20 +0.3
515,942 + -0.1
515,943 - AO353_02420 0.35 +0.2
515,943 - AO353_02420 0.35 +0.6
515,943 - AO353_02420 0.35 +0.5
516,038 + AO353_02420 0.47 -0.7
516,038 + AO353_02420 0.47 +1.7
516,039 - AO353_02420 0.47 +0.1
516,039 - AO353_02420 0.47 +0.2
516,092 + AO353_02420 0.54 +0.3
516,092 + AO353_02420 0.54 -0.9
516,092 + AO353_02420 0.54 -1.1
516,092 + AO353_02420 0.54 +0.5
516,119 + AO353_02420 0.57 +1.3
516,119 + AO353_02420 0.57 -0.3
516,341 + AO353_02420 0.85 +1.3
516,341 + AO353_02420 0.85 -0.8
516,341 + AO353_02420 0.85 -1.8
516,341 + AO353_02420 0.85 -0.4
516,342 - AO353_02420 0.85 +0.3
516,342 - AO353_02420 0.85 +1.3
516,342 - AO353_02420 0.85 -2.4
516,349 + AO353_02420 0.86 +1.8
516,349 + AO353_02420 0.86 +1.3
516,349 + AO353_02420 0.86 -0.4
516,349 + AO353_02420 0.86 -0.1
516,349 + AO353_02420 0.86 -0.3
516,350 - AO353_02420 0.86 +0.7
516,350 - AO353_02420 0.86 -0.1
516,350 - AO353_02420 0.86 +0.9
516,350 - AO353_02420 0.86 -0.7
516,350 - AO353_02420 0.86 +1.7
516,350 - AO353_02420 0.86 -3.1
516,359 - AO353_02420 0.87 +0.1
516,359 - AO353_02420 0.87 +0.3
516,359 - AO353_02420 0.87 +0.3
516,359 - AO353_02420 0.87 +1.7
516,399 - +0.5
516,436 + +0.9
516,437 - +0.0
516,437 - +1.7
516,466 + -0.3
516,466 + -0.7
516,466 + -2.1
516,466 + -1.7
516,466 + +0.7
516,466 + -0.1
516,466 + +0.9
516,466 + +0.9
516,466 + +2.7
516,466 + -0.7
516,466 + -2.2
516,467 - -0.8
516,467 - +1.3
516,467 - -1.7
516,467 - +0.6
516,467 - +0.9
516,467 - -1.5
516,724 + AO353_02425 0.26 +0.9
516,724 + AO353_02425 0.26 +1.1
516,724 + AO353_02425 0.26 -2.7
516,724 + AO353_02425 0.26 +2.3
516,724 + AO353_02425 0.26 -0.6
516,725 - AO353_02425 0.26 +1.5
516,725 - AO353_02425 0.26 -1.1
516,725 - AO353_02425 0.26 -0.9
517,138 + AO353_02425 0.67 +0.3
517,138 + AO353_02425 0.67 +0.3
517,138 + AO353_02425 0.67 +0.9
517,139 - AO353_02425 0.68 -0.9
517,139 - AO353_02425 0.68 -0.2
517,139 - AO353_02425 0.68 -0.7
517,139 - AO353_02425 0.68 -0.5
517,183 + AO353_02425 0.72 +0.2
517,183 + AO353_02425 0.72 -1.2
517,183 + AO353_02425 0.72 -0.5
517,183 + AO353_02425 0.72 -1.4
517,183 + AO353_02425 0.72 +0.3
517,183 + AO353_02425 0.72 -0.1
517,184 - AO353_02425 0.72 -0.7
517,184 - AO353_02425 0.72 -1.1
517,184 - AO353_02425 0.72 -0.3
517,184 - AO353_02425 0.72 -1.3
517,184 - AO353_02425 0.72 -0.1
517,184 - AO353_02425 0.72 +0.0
517,184 - AO353_02425 0.72 -1.8
517,457 + +0.1
517,457 + +2.3
517,458 - +0.4

Or see this region's nucleotide sequence