Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01455

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01450 and AO353_01455 overlap by 1 nucleotidesAO353_01455 and AO353_01460 overlap by 4 nucleotidesAO353_01460 and AO353_01465 are separated by 110 nucleotides AO353_01450: AO353_01450 - tetraacyldisaccharide 4'-kinase, at 311,056 to 312,066 _01450 AO353_01455: AO353_01455 - biopolymer transporter ExbD, at 312,066 to 312,494 _01455 AO353_01460: AO353_01460 - biopolymer transporter ExbB, at 312,491 to 313,126 _01460 AO353_01465: AO353_01465 - competence protein ComEC, at 313,237 to 315,471 _01465 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1at 312.480 kb on - strandat 313.164 kb on + strandat 313.164 kb on + strandat 313.164 kb on + strandat 313.164 kb on + strandat 313.164 kb on + strandat 313.165 kb on - strandat 313.165 kb on - strandat 313.239 kb on - strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.350 kb on - strandat 313.350 kb on - strandat 313.350 kb on - strandat 313.360 kb on - strandat 313.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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312,480 - -0.7
313,164 + +0.8
313,164 + -0.4
313,164 + +0.3
313,164 + +0.3
313,164 + -1.0
313,165 - -1.3
313,165 - +1.0
313,239 - -1.2
313,349 + -0.4
313,349 + -0.4
313,349 + -0.2
313,349 + -1.5
313,350 - -1.5
313,350 - -0.7
313,350 - -1.2
313,360 - -2.5
313,360 - -1.5

Or see this region's nucleotide sequence