Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00835

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00825 and AO353_00830 are separated by 107 nucleotidesAO353_00830 and AO353_00835 are separated by 114 nucleotidesAO353_00835 and AO353_00840 are separated by 2 nucleotidesAO353_00840 and AO353_00845 are separated by 63 nucleotides AO353_00825: AO353_00825 - porin, at 189,146 to 190,120 _00825 AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794 _00830 AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733 _00835 AO353_00840: AO353_00840 - CrfX protein, at 191,736 to 191,981 _00840 AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040 _00845 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 189.910 kb on - strand, within AO353_00825at 189.946 kb on - strand, within AO353_00825at 190.147 kb on - strandat 190.209 kb on - strandat 190.230 kb on - strandat 190.230 kb on - strandat 190.395 kb on - strand, within AO353_00830at 190.575 kb on + strand, within AO353_00830at 190.674 kb on + strand, within AO353_00830at 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.893 kb on - strandat 190.893 kb on - strandat 190.921 kb on - strandat 190.986 kb on + strandat 191.057 kb on + strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.220 kb on + strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.333 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.375 kb on - strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.469 kb on - strand, within AO353_00835at 191.490 kb on + strand, within AO353_00835at 191.635 kb on + strand, within AO353_00835at 191.636 kb on - strand, within AO353_00835at 191.771 kb on + strand, within AO353_00840at 191.982 kb on - strandat 191.982 kb on - strandat 191.982 kb on - strandat 191.998 kb on - strandat 191.998 kb on - strandat 192.048 kb on + strandat 192.049 kb on - strandat 192.049 kb on - strandat 192.162 kb on + strand, within AO353_00845at 192.162 kb on + strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.164 kb on + strand, within AO353_00845at 192.226 kb on + strand, within AO353_00845at 192.320 kb on - strand, within AO353_00845at 192.353 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.490 kb on + strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.566 kb on + strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.577 kb on + strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.587 kb on + strand, within AO353_00845at 192.588 kb on - strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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189,910 - AO353_00825 0.78 -0.2
189,946 - AO353_00825 0.82 -1.5
190,147 - -1.8
190,209 - -0.2
190,230 - +1.2
190,230 - +0.8
190,395 - AO353_00830 0.29 +0.3
190,575 + AO353_00830 0.61 +0.8
190,674 + AO353_00830 0.79 -0.8
190,888 - -1.4
190,888 - -0.9
190,888 - -1.8
190,888 - -1.2
190,888 - -2.8
190,888 - -0.4
190,888 - -1.2
190,888 - -1.8
190,888 - -2.3
190,888 - -3.3
190,893 - -2.6
190,893 - -0.6
190,921 - +2.8
190,986 + -1.5
191,057 + AO353_00835 0.18 -2.0
191,058 - AO353_00835 0.18 -2.0
191,058 - AO353_00835 0.18 -2.8
191,058 - AO353_00835 0.18 -1.8
191,058 - AO353_00835 0.18 -0.8
191,073 - AO353_00835 0.20 -0.5
191,073 - AO353_00835 0.20 -1.0
191,073 - AO353_00835 0.20 -2.8
191,073 - AO353_00835 0.20 -2.5
191,220 + AO353_00835 0.38 -1.2
191,221 - AO353_00835 0.38 -1.5
191,221 - AO353_00835 0.38 -0.4
191,221 - AO353_00835 0.38 -0.2
191,332 + AO353_00835 0.51 -2.0
191,332 + AO353_00835 0.51 +0.8
191,333 - AO353_00835 0.51 -2.0
191,366 - AO353_00835 0.55 -2.2
191,366 - AO353_00835 0.55 -1.4
191,366 - AO353_00835 0.55 -0.5
191,375 - AO353_00835 0.56 -0.2
191,378 + AO353_00835 0.57 -0.2
191,378 + AO353_00835 0.57 -2.5
191,379 - AO353_00835 0.57 -2.0
191,379 - AO353_00835 0.57 -0.5
191,379 - AO353_00835 0.57 -2.5
191,469 - AO353_00835 0.68 -2.4
191,490 + AO353_00835 0.70 -1.5
191,635 + AO353_00835 0.88 +0.8
191,636 - AO353_00835 0.88 -1.7
191,771 + AO353_00840 0.14 -1.1
191,982 - -1.5
191,982 - -0.2
191,982 - -0.2
191,998 - +0.0
191,998 - +0.6
192,048 + -2.2
192,049 - -0.4
192,049 - +0.4
192,162 + AO353_00845 0.12 -0.2
192,162 + AO353_00845 0.12 -2.1
192,163 - AO353_00845 0.12 -1.8
192,163 - AO353_00845 0.12 -0.5
192,163 - AO353_00845 0.12 +0.5
192,163 - AO353_00845 0.12 +1.1
192,163 - AO353_00845 0.12 +0.5
192,164 + AO353_00845 0.12 -1.5
192,226 + AO353_00845 0.18 -1.2
192,320 - AO353_00845 0.28 +1.5
192,353 - AO353_00845 0.31 +0.8
192,489 - AO353_00845 0.45 +0.2
192,489 - AO353_00845 0.45 +1.6
192,490 + AO353_00845 0.45 -2.0
192,491 - AO353_00845 0.45 +0.8
192,491 - AO353_00845 0.45 +2.1
192,566 + AO353_00845 0.52 -2.2
192,567 - AO353_00845 0.52 +1.7
192,567 - AO353_00845 0.52 +0.6
192,577 + AO353_00845 0.53 -0.8
192,578 - AO353_00845 0.54 -0.8
192,578 - AO353_00845 0.54 +2.6
192,578 - AO353_00845 0.54 +1.6
192,578 - AO353_00845 0.54 +0.8
192,587 + AO353_00845 0.54 -0.8
192,588 - AO353_00845 0.55 -1.0
192,589 + AO353_00845 0.55 -1.5
192,589 + AO353_00845 0.55 -1.5
192,589 + AO353_00845 0.55 -2.2
192,589 + AO353_00845 0.55 -1.6
192,589 + AO353_00845 0.55 -0.8
192,590 - AO353_00845 0.55 -2.5
192,590 - AO353_00845 0.55 +1.6
192,590 - AO353_00845 0.55 +2.2
192,590 - AO353_00845 0.55 -1.0
192,590 - AO353_00845 0.55 -1.2
192,590 - AO353_00845 0.55 -1.1
192,673 - AO353_00845 0.63 +0.8
192,673 - AO353_00845 0.63 -0.1
192,673 - AO353_00845 0.63 -1.2

Or see this region's nucleotide sequence