Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00825 and AO353_00830 are separated by 107 nucleotides AO353_00830 and AO353_00835 are separated by 114 nucleotides AO353_00835 and AO353_00840 are separated by 2 nucleotides AO353_00840 and AO353_00845 are separated by 63 nucleotides
AO353_00825: AO353_00825 - porin, at 189,146 to 190,120
_00825
AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794
_00830
AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733
_00835
AO353_00840: AO353_00840 - CrfX protein, at 191,736 to 191,981
_00840
AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040
_00845
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 189.910 kb on - strand, within AO353_00825 at 189.946 kb on - strand, within AO353_00825 at 190.147 kb on - strand at 190.209 kb on - strand at 190.230 kb on - strand at 190.230 kb on - strand at 190.395 kb on - strand, within AO353_00830 at 190.575 kb on + strand, within AO353_00830 at 190.674 kb on + strand, within AO353_00830 at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.888 kb on - strand at 190.893 kb on - strand at 190.893 kb on - strand at 190.921 kb on - strand at 190.986 kb on + strand at 191.057 kb on + strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.058 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.073 kb on - strand, within AO353_00835 at 191.220 kb on + strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.221 kb on - strand, within AO353_00835 at 191.332 kb on + strand, within AO353_00835 at 191.332 kb on + strand, within AO353_00835 at 191.333 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.366 kb on - strand, within AO353_00835 at 191.375 kb on - strand, within AO353_00835 at 191.378 kb on + strand, within AO353_00835 at 191.378 kb on + strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.379 kb on - strand, within AO353_00835 at 191.469 kb on - strand, within AO353_00835 at 191.490 kb on + strand, within AO353_00835 at 191.635 kb on + strand, within AO353_00835 at 191.636 kb on - strand, within AO353_00835 at 191.771 kb on + strand, within AO353_00840 at 191.982 kb on - strand at 191.982 kb on - strand at 191.982 kb on - strand at 191.998 kb on - strand at 191.998 kb on - strand at 192.048 kb on + strand at 192.049 kb on - strand at 192.049 kb on - strand at 192.162 kb on + strand, within AO353_00845 at 192.162 kb on + strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.163 kb on - strand, within AO353_00845 at 192.164 kb on + strand, within AO353_00845 at 192.226 kb on + strand, within AO353_00845 at 192.320 kb on - strand, within AO353_00845 at 192.353 kb on - strand, within AO353_00845 at 192.489 kb on - strand, within AO353_00845 at 192.489 kb on - strand, within AO353_00845 at 192.490 kb on + strand, within AO353_00845 at 192.491 kb on - strand, within AO353_00845 at 192.491 kb on - strand, within AO353_00845 at 192.566 kb on + strand, within AO353_00845 at 192.567 kb on - strand, within AO353_00845 at 192.567 kb on - strand, within AO353_00845 at 192.577 kb on + strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.578 kb on - strand, within AO353_00845 at 192.587 kb on + strand, within AO353_00845 at 192.588 kb on - strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.589 kb on + strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.590 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845 at 192.673 kb on - strand, within AO353_00845
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 189,910 - AO353_00825 0.78 -0.2 189,946 - AO353_00825 0.82 -1.5 190,147 - -1.8 190,209 - -0.2 190,230 - +1.2 190,230 - +0.8 190,395 - AO353_00830 0.29 +0.3 190,575 + AO353_00830 0.61 +0.8 190,674 + AO353_00830 0.79 -0.8 190,888 - -1.4 190,888 - -0.9 190,888 - -1.8 190,888 - -1.2 190,888 - -2.8 190,888 - -0.4 190,888 - -1.2 190,888 - -1.8 190,888 - -2.3 190,888 - -3.3 190,893 - -2.6 190,893 - -0.6 190,921 - +2.8 190,986 + -1.5 191,057 + AO353_00835 0.18 -2.0 191,058 - AO353_00835 0.18 -2.0 191,058 - AO353_00835 0.18 -2.8 191,058 - AO353_00835 0.18 -1.8 191,058 - AO353_00835 0.18 -0.8 191,073 - AO353_00835 0.20 -0.5 191,073 - AO353_00835 0.20 -1.0 191,073 - AO353_00835 0.20 -2.8 191,073 - AO353_00835 0.20 -2.5 191,220 + AO353_00835 0.38 -1.2 191,221 - AO353_00835 0.38 -1.5 191,221 - AO353_00835 0.38 -0.4 191,221 - AO353_00835 0.38 -0.2 191,332 + AO353_00835 0.51 -2.0 191,332 + AO353_00835 0.51 +0.8 191,333 - AO353_00835 0.51 -2.0 191,366 - AO353_00835 0.55 -2.2 191,366 - AO353_00835 0.55 -1.4 191,366 - AO353_00835 0.55 -0.5 191,375 - AO353_00835 0.56 -0.2 191,378 + AO353_00835 0.57 -0.2 191,378 + AO353_00835 0.57 -2.5 191,379 - AO353_00835 0.57 -2.0 191,379 - AO353_00835 0.57 -0.5 191,379 - AO353_00835 0.57 -2.5 191,469 - AO353_00835 0.68 -2.4 191,490 + AO353_00835 0.70 -1.5 191,635 + AO353_00835 0.88 +0.8 191,636 - AO353_00835 0.88 -1.7 191,771 + AO353_00840 0.14 -1.1 191,982 - -1.5 191,982 - -0.2 191,982 - -0.2 191,998 - +0.0 191,998 - +0.6 192,048 + -2.2 192,049 - -0.4 192,049 - +0.4 192,162 + AO353_00845 0.12 -0.2 192,162 + AO353_00845 0.12 -2.1 192,163 - AO353_00845 0.12 -1.8 192,163 - AO353_00845 0.12 -0.5 192,163 - AO353_00845 0.12 +0.5 192,163 - AO353_00845 0.12 +1.1 192,163 - AO353_00845 0.12 +0.5 192,164 + AO353_00845 0.12 -1.5 192,226 + AO353_00845 0.18 -1.2 192,320 - AO353_00845 0.28 +1.5 192,353 - AO353_00845 0.31 +0.8 192,489 - AO353_00845 0.45 +0.2 192,489 - AO353_00845 0.45 +1.6 192,490 + AO353_00845 0.45 -2.0 192,491 - AO353_00845 0.45 +0.8 192,491 - AO353_00845 0.45 +2.1 192,566 + AO353_00845 0.52 -2.2 192,567 - AO353_00845 0.52 +1.7 192,567 - AO353_00845 0.52 +0.6 192,577 + AO353_00845 0.53 -0.8 192,578 - AO353_00845 0.54 -0.8 192,578 - AO353_00845 0.54 +2.6 192,578 - AO353_00845 0.54 +1.6 192,578 - AO353_00845 0.54 +0.8 192,587 + AO353_00845 0.54 -0.8 192,588 - AO353_00845 0.55 -1.0 192,589 + AO353_00845 0.55 -1.5 192,589 + AO353_00845 0.55 -1.5 192,589 + AO353_00845 0.55 -2.2 192,589 + AO353_00845 0.55 -1.6 192,589 + AO353_00845 0.55 -0.8 192,590 - AO353_00845 0.55 -2.5 192,590 - AO353_00845 0.55 +1.6 192,590 - AO353_00845 0.55 +2.2 192,590 - AO353_00845 0.55 -1.0 192,590 - AO353_00845 0.55 -1.2 192,590 - AO353_00845 0.55 -1.1 192,673 - AO353_00845 0.63 +0.8 192,673 - AO353_00845 0.63 -0.1 192,673 - AO353_00845 0.63 -1.2
Or see this region's nucleotide sequence