Experiment: Benzalkonium Chloride 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00605 and AO353_00610 overlap by 1 nucleotides AO353_00610 and AO353_00615 are separated by 5 nucleotides AO353_00615 and AO353_00620 overlap by 4 nucleotides AO353_00620 and AO353_00625 are separated by 77 nucleotides
AO353_00605: AO353_00605 - cytochrome C oxidase Cbb3, at 128,140 to 129,582
_00605
AO353_00610: AO353_00610 - cytochrome C oxidase Cbb3, at 129,582 to 130,190
_00610
AO353_00615: AO353_00615 - cytochrome oxidase, at 130,196 to 130,381
_00615
AO353_00620: AO353_00620 - cytochrome C oxidase Cbb3, at 130,378 to 131,355
_00620
AO353_00625: AO353_00625 - phosphoesterase, at 131,433 to 132,443
_00625
Position (kb)
130
131
132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 129.403 kb on + strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.404 kb on - strand, within AO353_00605 at 129.499 kb on + strand at 129.499 kb on + strand at 129.500 kb on - strand at 129.608 kb on + strand at 129.609 kb on - strand at 129.891 kb on - strand, within AO353_00610 at 129.954 kb on + strand, within AO353_00610 at 130.077 kb on + strand, within AO353_00610 at 130.078 kb on - strand, within AO353_00610 at 130.193 kb on + strand at 130.194 kb on - strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.363 kb on + strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.364 kb on - strand at 130.383 kb on + strand at 130.383 kb on + strand at 130.400 kb on - strand at 130.400 kb on - strand at 130.525 kb on + strand at 131.143 kb on - strand, within AO353_00620 at 131.170 kb on - strand, within AO353_00620 at 131.197 kb on + strand, within AO353_00620 at 131.198 kb on - strand, within AO353_00620 at 131.198 kb on - strand, within AO353_00620 at 131.198 kb on - strand, within AO353_00620 at 131.273 kb on + strand at 131.308 kb on + strand at 131.309 kb on - strand at 131.354 kb on - strand at 131.481 kb on - strand at 131.481 kb on - strand at 131.481 kb on - strand at 131.543 kb on - strand, within AO353_00625 at 131.568 kb on + strand, within AO353_00625 at 131.581 kb on - strand, within AO353_00625 at 131.581 kb on - strand, within AO353_00625 at 131.594 kb on - strand, within AO353_00625 at 131.617 kb on + strand, within AO353_00625 at 131.617 kb on + strand, within AO353_00625 at 131.618 kb on - strand, within AO353_00625 at 131.618 kb on - strand, within AO353_00625 at 131.618 kb on - strand, within AO353_00625 at 131.682 kb on - strand, within AO353_00625 at 131.726 kb on - strand, within AO353_00625 at 131.738 kb on + strand, within AO353_00625 at 131.739 kb on - strand, within AO353_00625 at 131.748 kb on - strand, within AO353_00625 at 131.779 kb on - strand, within AO353_00625 at 131.779 kb on - strand, within AO353_00625 at 131.779 kb on - strand, within AO353_00625 at 131.779 kb on - strand, within AO353_00625 at 131.779 kb on - strand, within AO353_00625 at 131.811 kb on - strand, within AO353_00625 at 131.863 kb on + strand, within AO353_00625 at 131.864 kb on - strand, within AO353_00625 at 131.906 kb on + strand, within AO353_00625 at 131.995 kb on + strand, within AO353_00625 at 132.035 kb on + strand, within AO353_00625 at 132.035 kb on + strand, within AO353_00625 at 132.036 kb on - strand, within AO353_00625 at 132.036 kb on - strand, within AO353_00625 at 132.036 kb on - strand, within AO353_00625 at 132.036 kb on - strand, within AO353_00625 at 132.036 kb on - strand, within AO353_00625 at 132.059 kb on + strand, within AO353_00625 at 132.067 kb on + strand, within AO353_00625 at 132.067 kb on + strand, within AO353_00625 at 132.068 kb on - strand, within AO353_00625 at 132.068 kb on - strand, within AO353_00625 at 132.068 kb on - strand, within AO353_00625 at 132.078 kb on - strand, within AO353_00625 at 132.095 kb on - strand, within AO353_00625 at 132.096 kb on + strand, within AO353_00625 at 132.096 kb on + strand, within AO353_00625 at 132.097 kb on - strand, within AO353_00625 at 132.097 kb on - strand, within AO353_00625 at 132.133 kb on + strand, within AO353_00625 at 132.133 kb on + strand, within AO353_00625 at 132.134 kb on - strand, within AO353_00625 at 132.134 kb on - strand, within AO353_00625 at 132.134 kb on - strand, within AO353_00625 at 132.134 kb on - strand, within AO353_00625 at 132.134 kb on - strand, within AO353_00625 at 132.167 kb on + strand, within AO353_00625 at 132.238 kb on + strand, within AO353_00625 at 132.238 kb on + strand, within AO353_00625 at 132.249 kb on + strand, within AO353_00625 at 132.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml remove 129,403 + AO353_00605 0.88 -1.0 129,404 - AO353_00605 0.88 +0.3 129,404 - AO353_00605 0.88 +0.8 129,499 + +0.7 129,499 + -1.8 129,500 - -0.2 129,608 + +0.6 129,609 - +1.0 129,891 - AO353_00610 0.51 -0.2 129,954 + AO353_00610 0.61 -1.8 130,077 + AO353_00610 0.81 +0.6 130,078 - AO353_00610 0.81 -0.8 130,193 + +0.5 130,194 - +0.2 130,363 + +0.2 130,363 + -1.2 130,363 + -2.1 130,363 + +0.2 130,364 - -0.9 130,364 - -0.2 130,364 - +0.8 130,383 + -0.2 130,383 + +1.4 130,400 - -0.8 130,400 - -1.2 130,525 + +0.8 131,143 - AO353_00620 0.78 -0.8 131,170 - AO353_00620 0.81 -0.8 131,197 + AO353_00620 0.84 -0.9 131,198 - AO353_00620 0.84 -1.5 131,198 - AO353_00620 0.84 +1.4 131,198 - AO353_00620 0.84 -0.8 131,273 + -0.0 131,308 + -1.4 131,309 - -0.8 131,354 - -1.2 131,481 - -0.2 131,481 - +2.2 131,481 - +0.7 131,543 - AO353_00625 0.11 +0.8 131,568 + AO353_00625 0.13 -0.2 131,581 - AO353_00625 0.15 +1.8 131,581 - AO353_00625 0.15 +1.4 131,594 - AO353_00625 0.16 -0.5 131,617 + AO353_00625 0.18 -0.4 131,617 + AO353_00625 0.18 +0.1 131,618 - AO353_00625 0.18 +0.6 131,618 - AO353_00625 0.18 +0.2 131,618 - AO353_00625 0.18 -0.8 131,682 - AO353_00625 0.25 -1.1 131,726 - AO353_00625 0.29 +0.0 131,738 + AO353_00625 0.30 -1.2 131,739 - AO353_00625 0.30 -0.8 131,748 - AO353_00625 0.31 +1.5 131,779 - AO353_00625 0.34 +2.1 131,779 - AO353_00625 0.34 -0.6 131,779 - AO353_00625 0.34 -0.2 131,779 - AO353_00625 0.34 +1.6 131,779 - AO353_00625 0.34 +1.8 131,811 - AO353_00625 0.37 -2.4 131,863 + AO353_00625 0.43 -1.8 131,864 - AO353_00625 0.43 -1.2 131,906 + AO353_00625 0.47 +1.9 131,995 + AO353_00625 0.56 +0.8 132,035 + AO353_00625 0.60 +0.6 132,035 + AO353_00625 0.60 -0.5 132,036 - AO353_00625 0.60 -0.2 132,036 - AO353_00625 0.60 -1.8 132,036 - AO353_00625 0.60 -0.6 132,036 - AO353_00625 0.60 +0.5 132,036 - AO353_00625 0.60 +1.1 132,059 + AO353_00625 0.62 -1.4 132,067 + AO353_00625 0.63 +0.8 132,067 + AO353_00625 0.63 -1.2 132,068 - AO353_00625 0.63 -1.2 132,068 - AO353_00625 0.63 -1.8 132,068 - AO353_00625 0.63 +1.2 132,078 - AO353_00625 0.64 +1.1 132,095 - AO353_00625 0.65 -0.0 132,096 + AO353_00625 0.66 -0.6 132,096 + AO353_00625 0.66 +0.8 132,097 - AO353_00625 0.66 +0.3 132,097 - AO353_00625 0.66 -0.3 132,133 + AO353_00625 0.69 +1.1 132,133 + AO353_00625 0.69 -0.3 132,134 - AO353_00625 0.69 -1.4 132,134 - AO353_00625 0.69 +0.4 132,134 - AO353_00625 0.69 +0.1 132,134 - AO353_00625 0.69 +0.1 132,134 - AO353_00625 0.69 -1.5 132,167 + AO353_00625 0.73 -1.8 132,238 + AO353_00625 0.80 -1.6 132,238 + AO353_00625 0.80 +1.1 132,249 + AO353_00625 0.81 +1.5 132,345 - +0.8
Or see this region's nucleotide sequence