Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00620

Experiment: Benzalkonium Chloride 0.012 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00605 and AO353_00610 overlap by 1 nucleotidesAO353_00610 and AO353_00615 are separated by 5 nucleotidesAO353_00615 and AO353_00620 overlap by 4 nucleotidesAO353_00620 and AO353_00625 are separated by 77 nucleotides AO353_00605: AO353_00605 - cytochrome C oxidase Cbb3, at 128,140 to 129,582 _00605 AO353_00610: AO353_00610 - cytochrome C oxidase Cbb3, at 129,582 to 130,190 _00610 AO353_00615: AO353_00615 - cytochrome oxidase, at 130,196 to 130,381 _00615 AO353_00620: AO353_00620 - cytochrome C oxidase Cbb3, at 130,378 to 131,355 _00620 AO353_00625: AO353_00625 - phosphoesterase, at 131,433 to 132,443 _00625 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2at 129.403 kb on + strand, within AO353_00605at 129.404 kb on - strand, within AO353_00605at 129.404 kb on - strand, within AO353_00605at 129.499 kb on + strandat 129.499 kb on + strandat 129.500 kb on - strandat 129.608 kb on + strandat 129.609 kb on - strandat 129.891 kb on - strand, within AO353_00610at 129.954 kb on + strand, within AO353_00610at 130.077 kb on + strand, within AO353_00610at 130.078 kb on - strand, within AO353_00610at 130.193 kb on + strandat 130.194 kb on - strandat 130.363 kb on + strandat 130.363 kb on + strandat 130.363 kb on + strandat 130.363 kb on + strandat 130.364 kb on - strandat 130.364 kb on - strandat 130.364 kb on - strandat 130.383 kb on + strandat 130.383 kb on + strandat 130.400 kb on - strandat 130.400 kb on - strandat 130.525 kb on + strandat 131.143 kb on - strand, within AO353_00620at 131.170 kb on - strand, within AO353_00620at 131.197 kb on + strand, within AO353_00620at 131.198 kb on - strand, within AO353_00620at 131.198 kb on - strand, within AO353_00620at 131.198 kb on - strand, within AO353_00620at 131.273 kb on + strandat 131.308 kb on + strandat 131.309 kb on - strandat 131.354 kb on - strandat 131.481 kb on - strandat 131.481 kb on - strandat 131.481 kb on - strandat 131.543 kb on - strand, within AO353_00625at 131.568 kb on + strand, within AO353_00625at 131.581 kb on - strand, within AO353_00625at 131.581 kb on - strand, within AO353_00625at 131.594 kb on - strand, within AO353_00625at 131.617 kb on + strand, within AO353_00625at 131.617 kb on + strand, within AO353_00625at 131.618 kb on - strand, within AO353_00625at 131.618 kb on - strand, within AO353_00625at 131.618 kb on - strand, within AO353_00625at 131.682 kb on - strand, within AO353_00625at 131.726 kb on - strand, within AO353_00625at 131.738 kb on + strand, within AO353_00625at 131.739 kb on - strand, within AO353_00625at 131.748 kb on - strand, within AO353_00625at 131.779 kb on - strand, within AO353_00625at 131.779 kb on - strand, within AO353_00625at 131.779 kb on - strand, within AO353_00625at 131.779 kb on - strand, within AO353_00625at 131.779 kb on - strand, within AO353_00625at 131.811 kb on - strand, within AO353_00625at 131.863 kb on + strand, within AO353_00625at 131.864 kb on - strand, within AO353_00625at 131.906 kb on + strand, within AO353_00625at 131.995 kb on + strand, within AO353_00625at 132.035 kb on + strand, within AO353_00625at 132.035 kb on + strand, within AO353_00625at 132.036 kb on - strand, within AO353_00625at 132.036 kb on - strand, within AO353_00625at 132.036 kb on - strand, within AO353_00625at 132.036 kb on - strand, within AO353_00625at 132.036 kb on - strand, within AO353_00625at 132.059 kb on + strand, within AO353_00625at 132.067 kb on + strand, within AO353_00625at 132.067 kb on + strand, within AO353_00625at 132.068 kb on - strand, within AO353_00625at 132.068 kb on - strand, within AO353_00625at 132.068 kb on - strand, within AO353_00625at 132.078 kb on - strand, within AO353_00625at 132.095 kb on - strand, within AO353_00625at 132.096 kb on + strand, within AO353_00625at 132.096 kb on + strand, within AO353_00625at 132.097 kb on - strand, within AO353_00625at 132.097 kb on - strand, within AO353_00625at 132.133 kb on + strand, within AO353_00625at 132.133 kb on + strand, within AO353_00625at 132.134 kb on - strand, within AO353_00625at 132.134 kb on - strand, within AO353_00625at 132.134 kb on - strand, within AO353_00625at 132.134 kb on - strand, within AO353_00625at 132.134 kb on - strand, within AO353_00625at 132.167 kb on + strand, within AO353_00625at 132.238 kb on + strand, within AO353_00625at 132.238 kb on + strand, within AO353_00625at 132.249 kb on + strand, within AO353_00625at 132.345 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
remove
129,403 + AO353_00605 0.88 -1.0
129,404 - AO353_00605 0.88 +0.3
129,404 - AO353_00605 0.88 +0.8
129,499 + +0.7
129,499 + -1.8
129,500 - -0.2
129,608 + +0.6
129,609 - +1.0
129,891 - AO353_00610 0.51 -0.2
129,954 + AO353_00610 0.61 -1.8
130,077 + AO353_00610 0.81 +0.6
130,078 - AO353_00610 0.81 -0.8
130,193 + +0.5
130,194 - +0.2
130,363 + +0.2
130,363 + -1.2
130,363 + -2.1
130,363 + +0.2
130,364 - -0.9
130,364 - -0.2
130,364 - +0.8
130,383 + -0.2
130,383 + +1.4
130,400 - -0.8
130,400 - -1.2
130,525 + +0.8
131,143 - AO353_00620 0.78 -0.8
131,170 - AO353_00620 0.81 -0.8
131,197 + AO353_00620 0.84 -0.9
131,198 - AO353_00620 0.84 -1.5
131,198 - AO353_00620 0.84 +1.4
131,198 - AO353_00620 0.84 -0.8
131,273 + -0.0
131,308 + -1.4
131,309 - -0.8
131,354 - -1.2
131,481 - -0.2
131,481 - +2.2
131,481 - +0.7
131,543 - AO353_00625 0.11 +0.8
131,568 + AO353_00625 0.13 -0.2
131,581 - AO353_00625 0.15 +1.8
131,581 - AO353_00625 0.15 +1.4
131,594 - AO353_00625 0.16 -0.5
131,617 + AO353_00625 0.18 -0.4
131,617 + AO353_00625 0.18 +0.1
131,618 - AO353_00625 0.18 +0.6
131,618 - AO353_00625 0.18 +0.2
131,618 - AO353_00625 0.18 -0.8
131,682 - AO353_00625 0.25 -1.1
131,726 - AO353_00625 0.29 +0.0
131,738 + AO353_00625 0.30 -1.2
131,739 - AO353_00625 0.30 -0.8
131,748 - AO353_00625 0.31 +1.5
131,779 - AO353_00625 0.34 +2.1
131,779 - AO353_00625 0.34 -0.6
131,779 - AO353_00625 0.34 -0.2
131,779 - AO353_00625 0.34 +1.6
131,779 - AO353_00625 0.34 +1.8
131,811 - AO353_00625 0.37 -2.4
131,863 + AO353_00625 0.43 -1.8
131,864 - AO353_00625 0.43 -1.2
131,906 + AO353_00625 0.47 +1.9
131,995 + AO353_00625 0.56 +0.8
132,035 + AO353_00625 0.60 +0.6
132,035 + AO353_00625 0.60 -0.5
132,036 - AO353_00625 0.60 -0.2
132,036 - AO353_00625 0.60 -1.8
132,036 - AO353_00625 0.60 -0.6
132,036 - AO353_00625 0.60 +0.5
132,036 - AO353_00625 0.60 +1.1
132,059 + AO353_00625 0.62 -1.4
132,067 + AO353_00625 0.63 +0.8
132,067 + AO353_00625 0.63 -1.2
132,068 - AO353_00625 0.63 -1.2
132,068 - AO353_00625 0.63 -1.8
132,068 - AO353_00625 0.63 +1.2
132,078 - AO353_00625 0.64 +1.1
132,095 - AO353_00625 0.65 -0.0
132,096 + AO353_00625 0.66 -0.6
132,096 + AO353_00625 0.66 +0.8
132,097 - AO353_00625 0.66 +0.3
132,097 - AO353_00625 0.66 -0.3
132,133 + AO353_00625 0.69 +1.1
132,133 + AO353_00625 0.69 -0.3
132,134 - AO353_00625 0.69 -1.4
132,134 - AO353_00625 0.69 +0.4
132,134 - AO353_00625 0.69 +0.1
132,134 - AO353_00625 0.69 +0.1
132,134 - AO353_00625 0.69 -1.5
132,167 + AO353_00625 0.73 -1.8
132,238 + AO353_00625 0.80 -1.6
132,238 + AO353_00625 0.80 +1.1
132,249 + AO353_00625 0.81 +1.5
132,345 - +0.8

Or see this region's nucleotide sequence