Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00550

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00545 and AO353_00550 are separated by 282 nucleotidesAO353_00550 and AO353_00555 are separated by 48 nucleotidesAO353_00555 and AO353_00560 are separated by 200 nucleotides AO353_00545: AO353_00545 - erythronate-4-phosphate dehydrogenase, at 113,502 to 114,644 _00545 AO353_00550: AO353_00550 - MATE family efflux transporter, at 114,927 to 116,336 _00550 AO353_00555: AO353_00555 - sulfurtransferase, at 116,385 to 116,636 _00555 AO353_00560: AO353_00560 - 23S rRNA methyltransferase, at 116,837 to 117,910 _00560 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.673 kb on + strandat 114.673 kb on + strandat 114.673 kb on + strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.674 kb on - strandat 114.679 kb on + strandat 114.679 kb on + strandat 114.679 kb on + strandat 114.679 kb on + strandat 114.680 kb on - strandat 114.680 kb on - strandat 114.680 kb on - strandat 114.680 kb on - strandat 114.680 kb on - strandat 114.713 kb on - strandat 114.713 kb on - strandat 114.713 kb on - strandat 114.713 kb on - strandat 114.713 kb on - strandat 114.713 kb on - strandat 114.750 kb on - strandat 114.835 kb on + strandat 114.881 kb on + strandat 114.881 kb on + strandat 114.882 kb on - strandat 114.957 kb on - strandat 114.996 kb on - strandat 115.143 kb on + strand, within AO353_00550at 115.143 kb on + strand, within AO353_00550at 115.143 kb on + strand, within AO353_00550at 115.144 kb on - strand, within AO353_00550at 115.144 kb on - strand, within AO353_00550at 115.144 kb on - strand, within AO353_00550at 115.144 kb on - strand, within AO353_00550at 115.144 kb on - strand, within AO353_00550at 115.357 kb on - strand, within AO353_00550at 115.357 kb on - strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.398 kb on + strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.399 kb on - strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.401 kb on + strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.402 kb on - strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.405 kb on + strand, within AO353_00550at 115.406 kb on - strand, within AO353_00550at 115.406 kb on - strand, within AO353_00550at 115.406 kb on - strand, within AO353_00550at 115.406 kb on - strand, within AO353_00550at 115.416 kb on + strand, within AO353_00550at 115.416 kb on + strand, within AO353_00550at 115.417 kb on - strand, within AO353_00550at 115.417 kb on - strand, within AO353_00550at 115.417 kb on - strand, within AO353_00550at 115.471 kb on + strand, within AO353_00550at 115.471 kb on + strand, within AO353_00550at 115.471 kb on + strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.472 kb on - strand, within AO353_00550at 115.494 kb on + strand, within AO353_00550at 115.494 kb on + strand, within AO353_00550at 115.494 kb on + strand, within AO353_00550at 115.494 kb on + strand, within AO353_00550at 115.495 kb on - strand, within AO353_00550at 115.495 kb on - strand, within AO353_00550at 115.495 kb on - strand, within AO353_00550at 115.506 kb on + strand, within AO353_00550at 115.506 kb on + strand, within AO353_00550at 115.506 kb on + strand, within AO353_00550at 115.506 kb on + strand, within AO353_00550at 115.506 kb on + strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.507 kb on - strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.620 kb on + strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.621 kb on - strand, within AO353_00550at 115.715 kb on - strand, within AO353_00550at 115.834 kb on - strand, within AO353_00550at 115.834 kb on - strand, within AO353_00550at 115.876 kb on + strand, within AO353_00550at 115.877 kb on - strand, within AO353_00550at 115.998 kb on + strand, within AO353_00550at 115.998 kb on + strand, within AO353_00550at 116.046 kb on + strand, within AO353_00550at 116.047 kb on - strand, within AO353_00550at 116.058 kb on + strand, within AO353_00550at 116.059 kb on - strand, within AO353_00550at 116.152 kb on - strand, within AO353_00550at 116.178 kb on + strand, within AO353_00550at 116.178 kb on + strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.179 kb on - strand, within AO353_00550at 116.335 kb on - strandat 116.335 kb on - strandat 116.743 kb on + strandat 116.743 kb on + strandat 116.743 kb on + strandat 116.744 kb on - strandat 116.744 kb on - strandat 116.744 kb on - strandat 116.858 kb on + strandat 116.858 kb on + strandat 116.859 kb on - strandat 116.859 kb on - strandat 116.904 kb on + strandat 116.904 kb on + strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.992 kb on - strand, within AO353_00560at 116.992 kb on - strand, within AO353_00560at 116.992 kb on - strand, within AO353_00560at 117.139 kb on + strand, within AO353_00560at 117.139 kb on + strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560at 117.140 kb on - strand, within AO353_00560

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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114,673 + +1.1
114,673 + -1.9
114,673 + +0.8
114,674 - +0.2
114,674 - +0.8
114,674 - -0.5
114,674 - -0.8
114,674 - +0.2
114,674 - -2.8
114,674 - -0.4
114,679 + -0.6
114,679 + -0.2
114,679 + -0.5
114,679 + +0.4
114,680 - -0.2
114,680 - -0.8
114,680 - -2.0
114,680 - +0.6
114,680 - -1.2
114,713 - -0.8
114,713 - +2.4
114,713 - +0.2
114,713 - -0.5
114,713 - -0.3
114,713 - +1.0
114,750 - +0.1
114,835 + -1.6
114,881 + +0.4
114,881 + +1.5
114,882 - -2.1
114,957 - -0.2
114,996 - -0.9
115,143 + AO353_00550 0.15 -1.5
115,143 + AO353_00550 0.15 -0.9
115,143 + AO353_00550 0.15 -0.6
115,144 - AO353_00550 0.15 -2.5
115,144 - AO353_00550 0.15 -1.2
115,144 - AO353_00550 0.15 -0.2
115,144 - AO353_00550 0.15 -0.8
115,144 - AO353_00550 0.15 -2.8
115,357 - AO353_00550 0.30 +0.1
115,357 - AO353_00550 0.30 -2.0
115,398 + AO353_00550 0.33 -1.0
115,398 + AO353_00550 0.33 -0.8
115,398 + AO353_00550 0.33 -0.5
115,398 + AO353_00550 0.33 -1.9
115,398 + AO353_00550 0.33 -1.5
115,398 + AO353_00550 0.33 -1.2
115,399 - AO353_00550 0.33 -0.8
115,399 - AO353_00550 0.33 -2.2
115,399 - AO353_00550 0.33 -2.2
115,399 - AO353_00550 0.33 -1.2
115,399 - AO353_00550 0.33 -1.8
115,399 - AO353_00550 0.33 -1.9
115,399 - AO353_00550 0.33 -2.4
115,399 - AO353_00550 0.33 -0.8
115,399 - AO353_00550 0.33 -1.0
115,401 + AO353_00550 0.34 +0.6
115,401 + AO353_00550 0.34 -0.8
115,401 + AO353_00550 0.34 -0.2
115,401 + AO353_00550 0.34 -0.4
115,401 + AO353_00550 0.34 -1.4
115,401 + AO353_00550 0.34 -2.0
115,401 + AO353_00550 0.34 -1.8
115,401 + AO353_00550 0.34 -2.5
115,401 + AO353_00550 0.34 +0.2
115,401 + AO353_00550 0.34 -0.2
115,402 - AO353_00550 0.34 -0.3
115,402 - AO353_00550 0.34 -0.5
115,402 - AO353_00550 0.34 -1.2
115,402 - AO353_00550 0.34 -3.0
115,402 - AO353_00550 0.34 -1.2
115,402 - AO353_00550 0.34 -1.5
115,405 + AO353_00550 0.34 +0.4
115,405 + AO353_00550 0.34 -1.0
115,405 + AO353_00550 0.34 +0.1
115,405 + AO353_00550 0.34 +0.8
115,405 + AO353_00550 0.34 -1.5
115,405 + AO353_00550 0.34 -0.8
115,405 + AO353_00550 0.34 -1.0
115,405 + AO353_00550 0.34 -2.3
115,406 - AO353_00550 0.34 -0.7
115,406 - AO353_00550 0.34 -0.6
115,406 - AO353_00550 0.34 -2.9
115,406 - AO353_00550 0.34 -2.4
115,416 + AO353_00550 0.35 -2.0
115,416 + AO353_00550 0.35 -2.5
115,417 - AO353_00550 0.35 -0.6
115,417 - AO353_00550 0.35 -0.8
115,417 - AO353_00550 0.35 +1.4
115,471 + AO353_00550 0.39 -2.1
115,471 + AO353_00550 0.39 -1.9
115,471 + AO353_00550 0.39 -1.5
115,472 - AO353_00550 0.39 -1.5
115,472 - AO353_00550 0.39 -1.7
115,472 - AO353_00550 0.39 -0.4
115,472 - AO353_00550 0.39 -0.2
115,472 - AO353_00550 0.39 -0.6
115,472 - AO353_00550 0.39 -2.6
115,472 - AO353_00550 0.39 +1.2
115,494 + AO353_00550 0.40 +0.8
115,494 + AO353_00550 0.40 -0.5
115,494 + AO353_00550 0.40 -0.8
115,494 + AO353_00550 0.40 -1.0
115,495 - AO353_00550 0.40 -2.5
115,495 - AO353_00550 0.40 +0.8
115,495 - AO353_00550 0.40 +1.8
115,506 + AO353_00550 0.41 -1.4
115,506 + AO353_00550 0.41 -0.9
115,506 + AO353_00550 0.41 -0.9
115,506 + AO353_00550 0.41 +0.1
115,506 + AO353_00550 0.41 -1.4
115,507 - AO353_00550 0.41 +0.8
115,507 - AO353_00550 0.41 -0.9
115,507 - AO353_00550 0.41 -2.2
115,507 - AO353_00550 0.41 -0.6
115,507 - AO353_00550 0.41 -0.4
115,507 - AO353_00550 0.41 -0.4
115,620 + AO353_00550 0.49 -0.6
115,620 + AO353_00550 0.49 -3.0
115,620 + AO353_00550 0.49 -0.2
115,620 + AO353_00550 0.49 -0.2
115,620 + AO353_00550 0.49 -0.8
115,620 + AO353_00550 0.49 +0.8
115,620 + AO353_00550 0.49 -0.9
115,620 + AO353_00550 0.49 +1.1
115,620 + AO353_00550 0.49 -0.5
115,620 + AO353_00550 0.49 -0.9
115,620 + AO353_00550 0.49 +1.4
115,621 - AO353_00550 0.49 -0.1
115,621 - AO353_00550 0.49 -1.5
115,621 - AO353_00550 0.49 -1.6
115,621 - AO353_00550 0.49 +0.5
115,621 - AO353_00550 0.49 -1.2
115,621 - AO353_00550 0.49 -0.2
115,621 - AO353_00550 0.49 -1.0
115,621 - AO353_00550 0.49 -1.5
115,621 - AO353_00550 0.49 -1.0
115,715 - AO353_00550 0.56 +0.8
115,834 - AO353_00550 0.64 -0.8
115,834 - AO353_00550 0.64 -1.3
115,876 + AO353_00550 0.67 -1.4
115,877 - AO353_00550 0.67 -1.1
115,998 + AO353_00550 0.76 +0.5
115,998 + AO353_00550 0.76 -0.8
116,046 + AO353_00550 0.79 +1.1
116,047 - AO353_00550 0.79 -0.6
116,058 + AO353_00550 0.80 -0.5
116,059 - AO353_00550 0.80 -3.1
116,152 - AO353_00550 0.87 -1.8
116,178 + AO353_00550 0.89 -1.8
116,178 + AO353_00550 0.89 -0.8
116,179 - AO353_00550 0.89 -2.2
116,179 - AO353_00550 0.89 -1.9
116,179 - AO353_00550 0.89 -2.1
116,179 - AO353_00550 0.89 -0.2
116,335 - -1.3
116,335 - -3.1
116,743 + -0.6
116,743 + -0.6
116,743 + +0.1
116,744 - -0.2
116,744 - -0.2
116,744 - -1.2
116,858 + +0.8
116,858 + +1.2
116,859 - -0.9
116,859 - -0.3
116,904 + +0.7
116,904 + +0.3
116,905 - -0.5
116,905 - +1.0
116,905 - +0.4
116,992 - AO353_00560 0.14 -0.8
116,992 - AO353_00560 0.14 -2.6
116,992 - AO353_00560 0.14 +0.8
117,139 + AO353_00560 0.28 +1.2
117,139 + AO353_00560 0.28 +0.1
117,140 - AO353_00560 0.28 +0.5
117,140 - AO353_00560 0.28 -1.8
117,140 - AO353_00560 0.28 -0.8

Or see this region's nucleotide sequence