Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00405

Experiment: Benzalkonium Chloride 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00400 and AO353_00405 are separated by 119 nucleotidesAO353_00405 and AO353_00410 are separated by 9 nucleotides AO353_00400: AO353_00400 - citrate-proton symporter, at 73,881 to 75,182 _00400 AO353_00405: AO353_00405 - RND transporter, at 75,302 to 76,741 _00405 AO353_00410: AO353_00410 - cellulose synthase, at 76,751 to 78,901 _00410 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3at 74.522 kb on + strand, within AO353_00400at 74.522 kb on + strand, within AO353_00400at 74.523 kb on - strand, within AO353_00400at 74.625 kb on + strand, within AO353_00400at 74.626 kb on - strand, within AO353_00400at 74.626 kb on - strand, within AO353_00400at 74.896 kb on - strand, within AO353_00400at 74.896 kb on - strand, within AO353_00400at 74.904 kb on + strand, within AO353_00400at 74.904 kb on + strand, within AO353_00400at 74.904 kb on + strand, within AO353_00400at 74.904 kb on + strand, within AO353_00400at 74.905 kb on - strand, within AO353_00400at 74.905 kb on - strand, within AO353_00400at 75.026 kb on + strand, within AO353_00400at 75.026 kb on + strand, within AO353_00400at 75.026 kb on + strand, within AO353_00400at 75.027 kb on - strand, within AO353_00400at 75.027 kb on - strand, within AO353_00400at 75.027 kb on - strand, within AO353_00400at 75.027 kb on - strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.030 kb on + strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.031 kb on - strand, within AO353_00400at 75.092 kb on - strandat 75.092 kb on - strandat 75.210 kb on - strandat 75.210 kb on - strandat 75.256 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.354 kb on + strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.355 kb on - strandat 75.450 kb on + strand, within AO353_00405at 75.450 kb on + strand, within AO353_00405at 75.451 kb on - strand, within AO353_00405at 75.505 kb on - strand, within AO353_00405at 75.541 kb on + strand, within AO353_00405at 75.609 kb on + strand, within AO353_00405at 75.609 kb on + strand, within AO353_00405at 75.609 kb on + strand, within AO353_00405at 75.795 kb on + strand, within AO353_00405at 75.796 kb on - strand, within AO353_00405at 75.796 kb on - strand, within AO353_00405at 75.829 kb on + strand, within AO353_00405at 75.830 kb on - strand, within AO353_00405at 75.830 kb on - strand, within AO353_00405at 75.830 kb on - strand, within AO353_00405at 76.017 kb on + strand, within AO353_00405at 76.017 kb on + strand, within AO353_00405at 76.017 kb on + strand, within AO353_00405at 76.018 kb on - strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.098 kb on + strand, within AO353_00405at 76.099 kb on - strand, within AO353_00405at 76.099 kb on - strand, within AO353_00405at 76.099 kb on - strand, within AO353_00405at 76.140 kb on + strand, within AO353_00405at 76.140 kb on + strand, within AO353_00405at 76.140 kb on + strand, within AO353_00405at 76.140 kb on + strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.141 kb on - strand, within AO353_00405at 76.186 kb on + strand, within AO353_00405at 76.314 kb on + strand, within AO353_00405at 76.315 kb on - strand, within AO353_00405at 76.315 kb on - strand, within AO353_00405at 76.420 kb on - strand, within AO353_00405at 76.668 kb on + strandat 76.668 kb on + strandat 76.669 kb on - strandat 76.669 kb on - strandat 76.669 kb on - strandat 76.701 kb on - strandat 76.752 kb on + strandat 76.752 kb on + strandat 76.752 kb on + strandat 76.752 kb on + strandat 76.753 kb on - strandat 76.753 kb on - strandat 76.868 kb on + strandat 76.887 kb on + strandat 76.888 kb on - strandat 77.131 kb on + strand, within AO353_00410at 77.131 kb on + strand, within AO353_00410at 77.132 kb on - strand, within AO353_00410at 77.132 kb on - strand, within AO353_00410at 77.132 kb on - strand, within AO353_00410at 77.212 kb on + strand, within AO353_00410at 77.213 kb on - strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.337 kb on + strand, within AO353_00410at 77.338 kb on - strand, within AO353_00410at 77.338 kb on - strand, within AO353_00410at 77.338 kb on - strand, within AO353_00410at 77.338 kb on - strand, within AO353_00410at 77.377 kb on + strand, within AO353_00410at 77.377 kb on + strand, within AO353_00410at 77.377 kb on + strand, within AO353_00410at 77.377 kb on + strand, within AO353_00410at 77.377 kb on + strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.378 kb on - strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strandat 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.415 kb on + strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.416 kb on - strand, within AO353_00410at 77.423 kb on + strand, within AO353_00410at 77.424 kb on - strand, within AO353_00410at 77.614 kb on + strand, within AO353_00410at 77.614 kb on + strand, within AO353_00410at 77.615 kb on - strand, within AO353_00410at 77.615 kb on - strand, within AO353_00410at 77.615 kb on - strand, within AO353_00410at 77.615 kb on - strand, within AO353_00410at 77.700 kb on + strand, within AO353_00410at 77.700 kb on + strand, within AO353_00410at 77.701 kb on - strand, within AO353_00410at 77.701 kb on - strand, within AO353_00410at 77.701 kb on - strand, within AO353_00410at 77.721 kb on + strand, within AO353_00410at 77.722 kb on - strand, within AO353_00410at 77.722 kb on - strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.727 kb on + strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410at 77.728 kb on - strand, within AO353_00410

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.012 mg/ml
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74,522 + AO353_00400 0.49 -0.8
74,522 + AO353_00400 0.49 +0.9
74,523 - AO353_00400 0.49 -0.2
74,625 + AO353_00400 0.57 +1.4
74,626 - AO353_00400 0.57 +0.2
74,626 - AO353_00400 0.57 -1.2
74,896 - AO353_00400 0.78 +0.1
74,896 - AO353_00400 0.78 -1.1
74,904 + AO353_00400 0.79 -0.8
74,904 + AO353_00400 0.79 -0.1
74,904 + AO353_00400 0.79 +0.2
74,904 + AO353_00400 0.79 +0.8
74,905 - AO353_00400 0.79 -0.8
74,905 - AO353_00400 0.79 -0.1
75,026 + AO353_00400 0.88 +0.1
75,026 + AO353_00400 0.88 -0.0
75,026 + AO353_00400 0.88 -2.0
75,027 - AO353_00400 0.88 +1.1
75,027 - AO353_00400 0.88 -1.5
75,027 - AO353_00400 0.88 -0.6
75,027 - AO353_00400 0.88 -0.6
75,030 + AO353_00400 0.88 +0.2
75,030 + AO353_00400 0.88 +0.1
75,030 + AO353_00400 0.88 +0.1
75,030 + AO353_00400 0.88 -0.5
75,030 + AO353_00400 0.88 +0.8
75,030 + AO353_00400 0.88 -1.8
75,031 - AO353_00400 0.88 +1.5
75,031 - AO353_00400 0.88 -0.2
75,031 - AO353_00400 0.88 -0.5
75,031 - AO353_00400 0.88 +1.0
75,031 - AO353_00400 0.88 +0.1
75,031 - AO353_00400 0.88 -2.4
75,031 - AO353_00400 0.88 +0.1
75,031 - AO353_00400 0.88 -0.0
75,031 - AO353_00400 0.88 -1.5
75,031 - AO353_00400 0.88 -0.2
75,031 - AO353_00400 0.88 -0.6
75,031 - AO353_00400 0.88 -1.2
75,092 - -0.3
75,092 - +2.4
75,210 - +0.1
75,210 - +1.4
75,256 + +0.0
75,354 + +0.8
75,354 + -0.2
75,354 + -2.2
75,354 + -0.3
75,354 + -0.2
75,354 + +1.1
75,354 + +1.3
75,354 + -0.2
75,355 - +0.1
75,355 - +0.8
75,355 - +0.6
75,355 - -1.2
75,355 - -0.4
75,355 - +0.1
75,355 - +0.5
75,355 - -0.2
75,355 - +0.1
75,355 - +0.8
75,355 - -0.4
75,355 - -0.2
75,355 - +0.4
75,355 - -1.5
75,355 - +0.8
75,450 + AO353_00405 0.10 -1.2
75,450 + AO353_00405 0.10 +0.0
75,451 - AO353_00405 0.10 +0.1
75,505 - AO353_00405 0.14 +0.8
75,541 + AO353_00405 0.17 -1.5
75,609 + AO353_00405 0.21 -1.5
75,609 + AO353_00405 0.21 -0.3
75,609 + AO353_00405 0.21 +0.0
75,795 + AO353_00405 0.34 +2.4
75,796 - AO353_00405 0.34 +0.3
75,796 - AO353_00405 0.34 +0.3
75,829 + AO353_00405 0.37 -0.4
75,830 - AO353_00405 0.37 -1.4
75,830 - AO353_00405 0.37 -0.8
75,830 - AO353_00405 0.37 -0.6
76,017 + AO353_00405 0.50 +0.5
76,017 + AO353_00405 0.50 +0.3
76,017 + AO353_00405 0.50 -0.2
76,018 - AO353_00405 0.50 +0.8
76,098 + AO353_00405 0.55 -0.6
76,098 + AO353_00405 0.55 +0.7
76,098 + AO353_00405 0.55 -0.3
76,098 + AO353_00405 0.55 -1.2
76,098 + AO353_00405 0.55 +2.2
76,098 + AO353_00405 0.55 -0.2
76,099 - AO353_00405 0.55 +0.1
76,099 - AO353_00405 0.55 +2.2
76,099 - AO353_00405 0.55 -0.2
76,140 + AO353_00405 0.58 -0.2
76,140 + AO353_00405 0.58 -0.5
76,140 + AO353_00405 0.58 +0.4
76,140 + AO353_00405 0.58 -0.6
76,141 - AO353_00405 0.58 -1.4
76,141 - AO353_00405 0.58 -1.0
76,141 - AO353_00405 0.58 +0.2
76,141 - AO353_00405 0.58 +0.1
76,141 - AO353_00405 0.58 +0.5
76,141 - AO353_00405 0.58 -0.8
76,141 - AO353_00405 0.58 +0.2
76,141 - AO353_00405 0.58 -0.1
76,141 - AO353_00405 0.58 -0.8
76,141 - AO353_00405 0.58 -2.5
76,186 + AO353_00405 0.61 -0.9
76,314 + AO353_00405 0.70 +1.4
76,315 - AO353_00405 0.70 -2.2
76,315 - AO353_00405 0.70 -0.0
76,420 - AO353_00405 0.78 -0.3
76,668 + -0.6
76,668 + -0.8
76,669 - -0.9
76,669 - -0.2
76,669 - +0.4
76,701 - -1.2
76,752 + -0.2
76,752 + -2.3
76,752 + -0.8
76,752 + -1.0
76,753 - +0.2
76,753 - -0.8
76,868 + -1.0
76,887 + -1.5
76,888 - -0.2
77,131 + AO353_00410 0.18 -0.6
77,131 + AO353_00410 0.18 +0.5
77,132 - AO353_00410 0.18 +1.2
77,132 - AO353_00410 0.18 -1.8
77,132 - AO353_00410 0.18 +1.0
77,212 + AO353_00410 0.21 -1.5
77,213 - AO353_00410 0.21 -1.2
77,337 + AO353_00410 0.27 +0.2
77,337 + AO353_00410 0.27 +0.7
77,337 + AO353_00410 0.27 +0.8
77,337 + AO353_00410 0.27 -2.3
77,337 + AO353_00410 0.27 -1.8
77,337 + AO353_00410 0.27 -1.0
77,337 + AO353_00410 0.27 +0.2
77,338 - AO353_00410 0.27 -2.4
77,338 - AO353_00410 0.27 -2.1
77,338 - AO353_00410 0.27 +1.4
77,338 - AO353_00410 0.27 -1.2
77,377 + AO353_00410 0.29 +1.1
77,377 + AO353_00410 0.29 -1.5
77,377 + AO353_00410 0.29 -0.2
77,377 + AO353_00410 0.29 +0.8
77,377 + AO353_00410 0.29 -0.8
77,378 - AO353_00410 0.29 -0.2
77,378 - AO353_00410 0.29 +1.4
77,378 - AO353_00410 0.29 +0.9
77,378 - AO353_00410 0.29 -0.8
77,378 - AO353_00410 0.29 +1.4
77,378 - AO353_00410 0.29 +0.8
77,415 + AO353_00410 0.31 +1.2
77,415 + AO353_00410 0.31 +0.5
77,415 + AO353_00410 0.31 +0.8
77,415 + AO353_00410 0.31 -1.2
77,415 + AO353_00410 0.31 -0.6
77,415 + +2.4
77,415 + AO353_00410 0.31 -1.2
77,415 + AO353_00410 0.31 -0.1
77,415 + AO353_00410 0.31 +1.2
77,416 - AO353_00410 0.31 -1.2
77,416 - AO353_00410 0.31 +0.3
77,416 - AO353_00410 0.31 -1.1
77,416 - AO353_00410 0.31 -1.5
77,416 - AO353_00410 0.31 -0.9
77,416 - AO353_00410 0.31 +1.0
77,416 - AO353_00410 0.31 -2.4
77,416 - AO353_00410 0.31 +0.4
77,416 - AO353_00410 0.31 -0.2
77,423 + AO353_00410 0.31 -0.3
77,424 - AO353_00410 0.31 +0.8
77,614 + AO353_00410 0.40 -1.6
77,614 + AO353_00410 0.40 -0.3
77,615 - AO353_00410 0.40 +0.2
77,615 - AO353_00410 0.40 +0.8
77,615 - AO353_00410 0.40 +0.6
77,615 - AO353_00410 0.40 +0.0
77,700 + AO353_00410 0.44 +3.4
77,700 + AO353_00410 0.44 +1.6
77,701 - AO353_00410 0.44 +0.3
77,701 - AO353_00410 0.44 -1.2
77,701 - AO353_00410 0.44 -1.6
77,721 + AO353_00410 0.45 +0.8
77,722 - AO353_00410 0.45 +1.5
77,722 - AO353_00410 0.45 -1.4
77,727 + AO353_00410 0.45 -1.5
77,727 + AO353_00410 0.45 +1.6
77,727 + AO353_00410 0.45 +2.6
77,727 + AO353_00410 0.45 +0.3
77,727 + AO353_00410 0.45 -0.2
77,727 + AO353_00410 0.45 -2.0
77,727 + AO353_00410 0.45 +0.3
77,728 - AO353_00410 0.45 +0.3
77,728 - AO353_00410 0.45 -2.4
77,728 - AO353_00410 0.45 +0.6
77,728 - AO353_00410 0.45 -2.1
77,728 - AO353_00410 0.45 -0.1
77,728 - AO353_00410 0.45 +2.7
77,728 - AO353_00410 0.45 +0.8
77,728 - AO353_00410 0.45 +3.1
77,728 - AO353_00410 0.45 -1.8

Or see this region's nucleotide sequence