Experiment: 1-ethyl-3-methylimidazolium chloride 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0695 and Shewana3_0696 are separated by 108 nucleotides Shewana3_0696 and Shewana3_0697 are separated by 39 nucleotides Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides
Shewana3_0695: Shewana3_0695 - adenylosuccinate synthetase (RefSeq), at 810,372 to 811,667
_0695
Shewana3_0696: Shewana3_0696 - Sel1 domain-containing protein (RefSeq), at 811,776 to 812,432
_0696
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -2
-1
0
1 at 811.534 kb on + strand, within Shewana3_0695 at 811.628 kb on + strand at 811.958 kb on - strand, within Shewana3_0696 at 812.042 kb on + strand, within Shewana3_0696 at 812.051 kb on - strand, within Shewana3_0696 at 812.078 kb on - strand, within Shewana3_0696 at 812.262 kb on + strand, within Shewana3_0696 at 812.507 kb on - strand at 812.644 kb on + strand at 813.153 kb on - strand, within Shewana3_0697 at 813.377 kb on + strand, within Shewana3_0697 at 813.578 kb on + strand, within Shewana3_0697 at 813.620 kb on + strand, within Shewana3_0697 at 813.799 kb on - strand, within Shewana3_0697 at 813.947 kb on - strand, within Shewana3_0697 at 814.539 kb on + strand, within Shewana3_0697 at 814.560 kb on + strand, within Shewana3_0697 at 814.678 kb on - strand at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 20 mM remove 811,534 + Shewana3_0695 0.90 +0.1 811,628 + -0.0 811,958 - Shewana3_0696 0.28 -1.1 812,042 + Shewana3_0696 0.40 +0.6 812,051 - Shewana3_0696 0.42 -0.5 812,078 - Shewana3_0696 0.46 -0.5 812,262 + Shewana3_0696 0.74 +0.4 812,507 - -0.9 812,644 + -1.4 813,153 - Shewana3_0697 0.28 -1.7 813,377 + Shewana3_0697 0.37 -0.6 813,578 + Shewana3_0697 0.46 -0.6 813,620 + Shewana3_0697 0.47 -1.5 813,799 - Shewana3_0697 0.55 -1.1 813,947 - Shewana3_0697 0.61 -1.1 814,539 + Shewana3_0697 0.85 -0.2 814,560 + Shewana3_0697 0.86 -0.5 814,678 - -0.6 814,814 + -0.7 814,960 + -0.6 814,989 + Shewana3_0698 0.12 -0.8 815,034 + Shewana3_0698 0.18 -1.6 815,041 - Shewana3_0698 0.19 -1.8 815,076 + Shewana3_0698 0.23 -1.5 815,098 + Shewana3_0698 0.26 -1.8 815,508 + Shewana3_0698 0.82 -1.7 815,508 + Shewana3_0698 0.82 -1.7 815,744 + -0.6
Or see this region's nucleotide sequence