Experiment: 1-ethyl-3-methylimidazolium chloride 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4318 and Shewana3_4319 are separated by 2 nucleotides Shewana3_4319 and Shewana3_4320 are separated by 125 nucleotides
Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230
_4318
Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793
_4319
Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998
_4320
Position (kb) 209
210 Strain fitness (log2 ratio) -1
0
1 at 208.466 kb on + strand, within Shewana3_4318 at 208.471 kb on + strand, within Shewana3_4318 at 208.479 kb on - strand, within Shewana3_4318 at 208.507 kb on + strand, within Shewana3_4318 at 208.542 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.608 kb on + strand, within Shewana3_4318 at 208.616 kb on - strand, within Shewana3_4318 at 208.803 kb on + strand, within Shewana3_4318 at 208.977 kb on + strand at 208.985 kb on - strand at 209.038 kb on + strand at 209.163 kb on + strand at 209.381 kb on + strand, within Shewana3_4319 at 209.472 kb on + strand, within Shewana3_4319 at 209.608 kb on + strand, within Shewana3_4319 at 209.723 kb on - strand, within Shewana3_4319 at 209.764 kb on - strand at 209.767 kb on + strand at 209.898 kb on + strand at 209.905 kb on + strand at 209.918 kb on - strand at 209.925 kb on - strand at 210.099 kb on + strand, within Shewana3_4320 at 210.177 kb on - strand, within Shewana3_4320 at 210.190 kb on + strand, within Shewana3_4320 at 210.325 kb on - strand, within Shewana3_4320 at 210.552 kb on + strand, within Shewana3_4320 at 210.646 kb on + strand, within Shewana3_4320
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 20 mM remove 208,466 + Shewana3_4318 0.74 +0.1 208,471 + Shewana3_4318 0.74 -0.0 208,479 - Shewana3_4318 0.74 -0.3 208,507 + Shewana3_4318 0.75 -0.1 208,542 + Shewana3_4318 0.76 -0.1 208,608 + Shewana3_4318 0.78 -0.1 208,608 + Shewana3_4318 0.78 -0.2 208,616 - Shewana3_4318 0.79 +1.3 208,803 + Shewana3_4318 0.85 -0.1 208,977 + -0.1 208,985 - +0.2 209,038 + +0.1 209,163 + -0.6 209,381 + Shewana3_4319 0.26 -0.1 209,472 + Shewana3_4319 0.43 -0.2 209,608 + Shewana3_4319 0.67 -0.2 209,723 - Shewana3_4319 0.87 -1.2 209,764 - +0.0 209,767 + +0.0 209,898 + -0.1 209,905 + +0.1 209,918 - +0.2 209,925 - -0.2 210,099 + Shewana3_4320 0.17 +0.0 210,177 - Shewana3_4320 0.24 +0.0 210,190 + Shewana3_4320 0.25 -0.3 210,325 - Shewana3_4320 0.38 +0.0 210,552 + Shewana3_4320 0.59 +0.7 210,646 + Shewana3_4320 0.67 -0.8
Or see this region's nucleotide sequence