Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1285

Experiment: Ceftazidime 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmoaA and moaE overlap by 4 nucleotidesmoaE and moaD are separated by 2 nucleotidesmoaD and moaC overlap by 4 nucleotidesmoaC and moeA are separated by 103 nucleotides Synpcc7942_1282: moaA - molybdenum cofactor biosynthesis protein A, at 1,304,480 to 1,305,463 moaA Synpcc7942_1283: moaE - molybdopterin synthase subunit MoaE, at 1,305,460 to 1,305,957 moaE Synpcc7942_1284: moaD - molybdopterin converting factor subunit 1, at 1,305,960 to 1,306,232 moaD Synpcc7942_1285: moaC - bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein, at 1,306,229 to 1,307,200 moaC Synpcc7942_1286: moeA - molybdopterin molybdochelatase, at 1,307,304 to 1,308,515 moeA Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -2 -1 0 1at 1305.958 kb on + strandat 1305.966 kb on - strandat 1306.242 kb on + strandat 1306.250 kb on - strandat 1306.250 kb on - strandat 1306.855 kb on - strandat 1307.211 kb on - strandat 1307.215 kb on - strandat 1307.234 kb on - strandat 1307.265 kb on + strandat 1307.270 kb on + strandat 1307.278 kb on - strandat 1307.280 kb on - strandat 1307.288 kb on + strandat 1307.301 kb on + strandat 1307.307 kb on + strandat 1307.309 kb on - strandat 1307.309 kb on - strandat 1307.315 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.03125 mg/ml
remove
1,305,958 + +0.6
1,305,966 - +0.5
1,306,242 + -1.6
1,306,250 - +0.2
1,306,250 - +0.4
1,306,855 - -1.0
1,307,211 - +0.3
1,307,215 - -0.3
1,307,234 - -0.4
1,307,265 + -1.0
1,307,270 + -0.2
1,307,278 - -0.4
1,307,280 - +0.2
1,307,288 + +0.7
1,307,301 + +0.9
1,307,307 + +0.7
1,307,309 - +0.6
1,307,309 - -2.1
1,307,315 - +0.6

Or see this region's nucleotide sequence