Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0807

Experiment: Ceftazidime 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0805 and Synpcc7942_0806 overlap by 1 nucleotidesSynpcc7942_0806 and Synpcc7942_0807 are separated by 13 nucleotidesSynpcc7942_0807 and sps are separated by 171 nucleotides Synpcc7942_0805: Synpcc7942_0805 - hypothetical protein, at 798,349 to 799,095 _0805 Synpcc7942_0806: Synpcc7942_0806 - hypothetical protein, at 799,095 to 799,826 _0806 Synpcc7942_0807: Synpcc7942_0807 - hypothetical protein, at 799,840 to 800,679 _0807 Synpcc7942_0808: sps - HAD-superfamily hydrolase subfamily IIB, at 800,851 to 802,980 sps Position (kb) 799 800 801Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 798.841 kb on + strand, within Synpcc7942_0805at 798.889 kb on + strand, within Synpcc7942_0805at 798.889 kb on + strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.897 kb on - strand, within Synpcc7942_0805at 798.916 kb on + strand, within Synpcc7942_0805at 798.965 kb on - strand, within Synpcc7942_0805at 799.059 kb on - strandat 799.079 kb on - strandat 799.123 kb on - strandat 799.132 kb on + strandat 799.209 kb on + strand, within Synpcc7942_0806at 799.219 kb on + strand, within Synpcc7942_0806at 799.252 kb on - strand, within Synpcc7942_0806at 799.257 kb on + strand, within Synpcc7942_0806at 799.257 kb on + strand, within Synpcc7942_0806at 799.265 kb on - strand, within Synpcc7942_0806at 799.265 kb on - strand, within Synpcc7942_0806at 799.285 kb on - strand, within Synpcc7942_0806at 799.297 kb on + strand, within Synpcc7942_0806at 799.302 kb on + strand, within Synpcc7942_0806at 799.324 kb on + strand, within Synpcc7942_0806at 799.324 kb on + strand, within Synpcc7942_0806at 799.332 kb on - strand, within Synpcc7942_0806at 799.334 kb on + strand, within Synpcc7942_0806at 799.342 kb on - strand, within Synpcc7942_0806at 799.344 kb on - strand, within Synpcc7942_0806at 799.354 kb on - strand, within Synpcc7942_0806at 799.354 kb on - strand, within Synpcc7942_0806at 799.381 kb on + strand, within Synpcc7942_0806at 799.399 kb on + strand, within Synpcc7942_0806at 799.520 kb on + strand, within Synpcc7942_0806at 799.540 kb on + strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.548 kb on - strand, within Synpcc7942_0806at 799.562 kb on - strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.582 kb on + strand, within Synpcc7942_0806at 799.658 kb on - strand, within Synpcc7942_0806at 799.685 kb on + strand, within Synpcc7942_0806at 799.687 kb on - strand, within Synpcc7942_0806at 799.730 kb on + strand, within Synpcc7942_0806at 799.742 kb on - strand, within Synpcc7942_0806at 799.743 kb on - strand, within Synpcc7942_0806at 799.768 kb on + strandat 799.787 kb on - strandat 799.794 kb on - strandat 799.798 kb on - strandat 799.823 kb on + strandat 799.857 kb on - strandat 799.900 kb on + strandat 799.910 kb on - strandat 799.910 kb on - strandat 799.927 kb on + strand, within Synpcc7942_0807at 799.935 kb on - strand, within Synpcc7942_0807at 799.945 kb on - strand, within Synpcc7942_0807at 799.957 kb on + strand, within Synpcc7942_0807at 799.957 kb on + strand, within Synpcc7942_0807at 799.963 kb on - strand, within Synpcc7942_0807at 800.012 kb on + strand, within Synpcc7942_0807at 800.087 kb on - strand, within Synpcc7942_0807at 800.126 kb on + strandat 800.133 kb on - strand, within Synpcc7942_0807at 800.134 kb on - strand, within Synpcc7942_0807at 800.141 kb on + strand, within Synpcc7942_0807at 800.149 kb on - strand, within Synpcc7942_0807at 800.177 kb on + strand, within Synpcc7942_0807at 800.195 kb on + strand, within Synpcc7942_0807at 800.195 kb on + strand, within Synpcc7942_0807at 800.220 kb on + strand, within Synpcc7942_0807at 800.229 kb on - strand, within Synpcc7942_0807at 800.261 kb on + strand, within Synpcc7942_0807at 800.268 kb on + strand, within Synpcc7942_0807at 800.269 kb on + strand, within Synpcc7942_0807at 800.291 kb on + strand, within Synpcc7942_0807at 800.314 kb on + strand, within Synpcc7942_0807at 800.316 kb on + strand, within Synpcc7942_0807at 800.339 kb on - strand, within Synpcc7942_0807at 800.350 kb on - strand, within Synpcc7942_0807at 800.350 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.372 kb on - strand, within Synpcc7942_0807at 800.397 kb on + strand, within Synpcc7942_0807at 800.405 kb on - strand, within Synpcc7942_0807at 800.429 kb on + strand, within Synpcc7942_0807at 800.594 kb on + strand, within Synpcc7942_0807at 800.682 kb on + strandat 800.682 kb on - strandat 800.702 kb on + strandat 800.745 kb on + strandat 800.755 kb on + strandat 800.766 kb on - strandat 800.769 kb on - strandat 800.794 kb on - strandat 800.801 kb on - strandat 800.842 kb on - strandat 800.857 kb on - strandat 800.857 kb on - strandat 800.880 kb on + strandat 800.895 kb on - strandat 800.917 kb on - strandat 800.919 kb on + strandat 800.987 kb on - strandat 801.070 kb on + strand, within spsat 801.070 kb on + strand, within spsat 801.071 kb on + strand, within spsat 801.130 kb on + strand, within spsat 801.140 kb on + strand, within spsat 801.183 kb on + strand, within spsat 801.186 kb on - strand, within spsat 801.196 kb on + strand, within spsat 801.198 kb on + strand, within spsat 801.206 kb on - strandat 801.245 kb on + strand, within spsat 801.285 kb on - strand, within spsat 801.367 kb on - strandat 801.415 kb on + strand, within spsat 801.447 kb on - strand, within spsat 801.457 kb on - strand, within spsat 801.501 kb on + strand, within spsat 801.559 kb on - strand, within spsat 801.597 kb on - strand, within spsat 801.656 kb on + strand, within sps

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.03125 mg/ml
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798,841 + Synpcc7942_0805 0.66 -1.1
798,889 + Synpcc7942_0805 0.72 +0.5
798,889 + Synpcc7942_0805 0.72 -1.5
798,897 - Synpcc7942_0805 0.73 +2.8
798,897 - Synpcc7942_0805 0.73 -1.9
798,897 - Synpcc7942_0805 0.73 -0.9
798,897 - Synpcc7942_0805 0.73 -0.6
798,916 + Synpcc7942_0805 0.76 +1.1
798,965 - Synpcc7942_0805 0.82 +1.4
799,059 - -0.4
799,079 - +0.1
799,123 - +2.3
799,132 + +0.4
799,209 + Synpcc7942_0806 0.16 -1.5
799,219 + Synpcc7942_0806 0.17 -2.0
799,252 - Synpcc7942_0806 0.21 -0.4
799,257 + Synpcc7942_0806 0.22 -0.2
799,257 + Synpcc7942_0806 0.22 +1.4
799,265 - Synpcc7942_0806 0.23 +0.1
799,265 - Synpcc7942_0806 0.23 +0.3
799,285 - Synpcc7942_0806 0.26 -0.4
799,297 + Synpcc7942_0806 0.28 +0.8
799,302 + Synpcc7942_0806 0.28 +0.4
799,324 + Synpcc7942_0806 0.31 -1.4
799,324 + Synpcc7942_0806 0.31 -1.6
799,332 - Synpcc7942_0806 0.32 +0.2
799,334 + Synpcc7942_0806 0.33 -2.0
799,342 - Synpcc7942_0806 0.34 -0.0
799,344 - Synpcc7942_0806 0.34 -0.3
799,354 - Synpcc7942_0806 0.35 -1.6
799,354 - Synpcc7942_0806 0.35 -1.0
799,381 + Synpcc7942_0806 0.39 -0.6
799,399 + Synpcc7942_0806 0.42 -0.4
799,520 + Synpcc7942_0806 0.58 -1.6
799,540 + Synpcc7942_0806 0.61 +0.1
799,548 - Synpcc7942_0806 0.62 -1.3
799,548 - Synpcc7942_0806 0.62 -0.0
799,548 - Synpcc7942_0806 0.62 -2.8
799,562 - Synpcc7942_0806 0.64 -1.4
799,582 + Synpcc7942_0806 0.67 -0.3
799,582 + Synpcc7942_0806 0.67 -0.5
799,582 + Synpcc7942_0806 0.67 -1.0
799,658 - Synpcc7942_0806 0.77 -0.7
799,685 + Synpcc7942_0806 0.81 -2.6
799,687 - Synpcc7942_0806 0.81 +0.2
799,730 + Synpcc7942_0806 0.87 -0.0
799,742 - Synpcc7942_0806 0.88 +1.4
799,743 - Synpcc7942_0806 0.89 +0.4
799,768 + +0.8
799,787 - -1.0
799,794 - +0.8
799,798 - -0.0
799,823 + +0.5
799,857 - +2.0
799,900 + -0.3
799,910 - -1.8
799,910 - -0.4
799,927 + Synpcc7942_0807 0.10 -2.3
799,935 - Synpcc7942_0807 0.11 +0.6
799,945 - Synpcc7942_0807 0.12 -1.6
799,957 + Synpcc7942_0807 0.14 -2.8
799,957 + Synpcc7942_0807 0.14 +2.0
799,963 - Synpcc7942_0807 0.15 +1.0
800,012 + Synpcc7942_0807 0.20 -0.6
800,087 - Synpcc7942_0807 0.29 +0.7
800,126 + -1.0
800,133 - Synpcc7942_0807 0.35 +1.0
800,134 - Synpcc7942_0807 0.35 -2.0
800,141 + Synpcc7942_0807 0.36 +1.1
800,149 - Synpcc7942_0807 0.37 -0.2
800,177 + Synpcc7942_0807 0.40 -2.0
800,195 + Synpcc7942_0807 0.42 +0.2
800,195 + Synpcc7942_0807 0.42 -2.6
800,220 + Synpcc7942_0807 0.45 -0.3
800,229 - Synpcc7942_0807 0.46 +2.6
800,261 + Synpcc7942_0807 0.50 -0.0
800,268 + Synpcc7942_0807 0.51 -1.0
800,269 + Synpcc7942_0807 0.51 -0.4
800,291 + Synpcc7942_0807 0.54 -0.2
800,314 + Synpcc7942_0807 0.56 -0.1
800,316 + Synpcc7942_0807 0.57 +2.6
800,339 - Synpcc7942_0807 0.59 -0.4
800,350 - Synpcc7942_0807 0.61 +1.0
800,350 - Synpcc7942_0807 0.61 +0.6
800,372 - Synpcc7942_0807 0.63 -0.4
800,372 - Synpcc7942_0807 0.63 +0.3
800,372 - Synpcc7942_0807 0.63 -1.6
800,397 + Synpcc7942_0807 0.66 -0.3
800,405 - Synpcc7942_0807 0.67 +1.7
800,429 + Synpcc7942_0807 0.70 -2.2
800,594 + Synpcc7942_0807 0.90 -0.5
800,682 + -0.2
800,682 - +0.3
800,702 + -0.4
800,745 + +0.3
800,755 + -1.6
800,766 - +0.4
800,769 - -0.5
800,794 - +0.2
800,801 - -0.6
800,842 - +1.7
800,857 - +0.6
800,857 - -1.6
800,880 + +0.6
800,895 - +0.8
800,917 - -0.3
800,919 + +1.0
800,987 - -1.0
801,070 + sps Synpcc7942_0808 0.10 +0.3
801,070 + sps Synpcc7942_0808 0.10 -0.0
801,071 + sps Synpcc7942_0808 0.10 -1.0
801,130 + sps Synpcc7942_0808 0.13 +0.2
801,140 + sps Synpcc7942_0808 0.14 +2.0
801,183 + sps Synpcc7942_0808 0.16 +0.1
801,186 - sps Synpcc7942_0808 0.16 +0.6
801,196 + sps Synpcc7942_0808 0.16 +1.0
801,198 + sps Synpcc7942_0808 0.16 -1.0
801,206 - -1.4
801,245 + sps Synpcc7942_0808 0.18 +1.0
801,285 - sps Synpcc7942_0808 0.20 +2.4
801,367 - +2.0
801,415 + sps Synpcc7942_0808 0.26 -0.7
801,447 - sps Synpcc7942_0808 0.28 -0.0
801,457 - sps Synpcc7942_0808 0.28 -0.0
801,501 + sps Synpcc7942_0808 0.31 +1.0
801,559 - sps Synpcc7942_0808 0.33 -1.3
801,597 - sps Synpcc7942_0808 0.35 +0.3
801,656 + sps Synpcc7942_0808 0.38 +0.1

Or see this region's nucleotide sequence