Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0443

Experiment: Ceftazidime 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntamt1 and Synpcc7942_0443 are separated by 124 nucleotidesSynpcc7942_0443 and Synpcc7942_0444 are separated by 39 nucleotides Synpcc7942_0442: amt1 - ammonium transporter, at 431,458 to 432,951 amt1 Synpcc7942_0443: Synpcc7942_0443 - hypothetical protein, at 433,076 to 434,317 _0443 Synpcc7942_0444: Synpcc7942_0444 - hypothetical protein, at 434,357 to 435,040 _0444 Position (kb) 433 434 435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 432.100 kb on + strand, within amt1at 432.140 kb on + strand, within amt1at 432.203 kb on - strand, within amt1at 432.217 kb on + strand, within amt1at 432.222 kb on + strand, within amt1at 432.225 kb on - strand, within amt1at 432.225 kb on - strand, within amt1at 432.230 kb on + strand, within amt1at 432.242 kb on + strand, within amt1at 432.266 kb on - strand, within amt1at 432.297 kb on - strand, within amt1at 432.297 kb on - strand, within amt1at 432.297 kb on - strand, within amt1at 432.359 kb on + strand, within amt1at 432.378 kb on - strand, within amt1at 432.404 kb on + strand, within amt1at 432.404 kb on + strand, within amt1at 432.412 kb on - strand, within amt1at 432.412 kb on - strand, within amt1at 432.412 kb on - strand, within amt1at 432.414 kb on + strand, within amt1at 432.435 kb on - strand, within amt1at 432.457 kb on - strand, within amt1at 432.469 kb on + strand, within amt1at 432.477 kb on + strand, within amt1at 432.516 kb on - strand, within amt1at 432.538 kb on + strand, within amt1at 432.609 kb on - strand, within amt1at 432.696 kb on + strand, within amt1at 432.717 kb on + strand, within amt1at 432.717 kb on + strand, within amt1at 432.717 kb on + strand, within amt1at 432.725 kb on - strand, within amt1at 432.725 kb on - strand, within amt1at 432.727 kb on + strand, within amt1at 432.738 kb on - strand, within amt1at 432.777 kb on + strand, within amt1at 432.795 kb on - strand, within amt1at 432.824 kb on - strandat 432.864 kb on - strandat 432.865 kb on + strandat 432.873 kb on - strandat 432.907 kb on - strandat 432.928 kb on + strandat 432.952 kb on + strandat 433.054 kb on - strandat 433.057 kb on + strandat 433.103 kb on + strandat 433.181 kb on + strandat 433.181 kb on + strandat 433.186 kb on + strandat 433.189 kb on - strandat 433.189 kb on - strandat 433.189 kb on - strandat 433.189 kb on - strandat 433.194 kb on - strandat 433.204 kb on - strand, within Synpcc7942_0443at 433.238 kb on - strand, within Synpcc7942_0443at 433.239 kb on + strand, within Synpcc7942_0443at 433.245 kb on - strand, within Synpcc7942_0443at 433.265 kb on + strandat 433.270 kb on - strand, within Synpcc7942_0443at 433.273 kb on - strand, within Synpcc7942_0443at 433.281 kb on + strand, within Synpcc7942_0443at 433.288 kb on - strand, within Synpcc7942_0443at 433.288 kb on - strand, within Synpcc7942_0443at 433.305 kb on - strand, within Synpcc7942_0443at 433.307 kb on + strand, within Synpcc7942_0443at 433.309 kb on + strand, within Synpcc7942_0443at 433.315 kb on - strand, within Synpcc7942_0443at 433.325 kb on - strand, within Synpcc7942_0443at 433.346 kb on + strand, within Synpcc7942_0443at 433.373 kb on + strand, within Synpcc7942_0443at 433.376 kb on - strand, within Synpcc7942_0443at 433.506 kb on + strand, within Synpcc7942_0443at 433.512 kb on - strand, within Synpcc7942_0443at 433.516 kb on + strand, within Synpcc7942_0443at 433.594 kb on + strand, within Synpcc7942_0443at 433.594 kb on + strand, within Synpcc7942_0443at 433.602 kb on - strand, within Synpcc7942_0443at 433.602 kb on - strand, within Synpcc7942_0443at 433.603 kb on - strand, within Synpcc7942_0443at 433.674 kb on + strand, within Synpcc7942_0443at 433.680 kb on + strand, within Synpcc7942_0443at 433.750 kb on + strand, within Synpcc7942_0443at 433.763 kb on - strand, within Synpcc7942_0443at 433.778 kb on - strand, within Synpcc7942_0443at 433.788 kb on - strandat 433.811 kb on + strand, within Synpcc7942_0443at 433.811 kb on + strand, within Synpcc7942_0443at 433.876 kb on + strand, within Synpcc7942_0443at 433.882 kb on + strand, within Synpcc7942_0443at 433.890 kb on - strand, within Synpcc7942_0443at 433.890 kb on - strand, within Synpcc7942_0443at 433.918 kb on - strand, within Synpcc7942_0443at 433.920 kb on - strand, within Synpcc7942_0443at 433.957 kb on - strand, within Synpcc7942_0443at 434.009 kb on - strand, within Synpcc7942_0443at 434.104 kb on + strand, within Synpcc7942_0443at 434.112 kb on - strand, within Synpcc7942_0443at 434.153 kb on - strand, within Synpcc7942_0443at 434.174 kb on + strand, within Synpcc7942_0443at 434.182 kb on - strand, within Synpcc7942_0443at 434.182 kb on - strand, within Synpcc7942_0443at 434.182 kb on - strand, within Synpcc7942_0443at 434.211 kb on + strandat 434.217 kb on + strandat 434.221 kb on + strandat 434.226 kb on - strandat 434.227 kb on + strandat 434.236 kb on + strandat 434.243 kb on - strandat 434.244 kb on - strandat 434.251 kb on - strandat 434.262 kb on - strandat 434.306 kb on + strandat 434.312 kb on + strandat 434.315 kb on + strandat 434.343 kb on + strandat 434.349 kb on + strandat 434.361 kb on - strandat 434.378 kb on + strandat 434.383 kb on + strandat 434.383 kb on + strandat 434.391 kb on - strandat 434.506 kb on - strand, within Synpcc7942_0444at 434.516 kb on + strand, within Synpcc7942_0444at 434.516 kb on + strand, within Synpcc7942_0444at 434.516 kb on + strand, within Synpcc7942_0444at 434.522 kb on - strand, within Synpcc7942_0444at 434.523 kb on + strand, within Synpcc7942_0444at 434.524 kb on - strand, within Synpcc7942_0444at 434.524 kb on - strand, within Synpcc7942_0444at 434.524 kb on - strand, within Synpcc7942_0444at 434.526 kb on + strand, within Synpcc7942_0444at 434.526 kb on + strand, within Synpcc7942_0444at 434.528 kb on + strand, within Synpcc7942_0444at 434.533 kb on + strand, within Synpcc7942_0444at 434.534 kb on - strand, within Synpcc7942_0444at 434.541 kb on - strand, within Synpcc7942_0444at 434.567 kb on - strand, within Synpcc7942_0444at 434.652 kb on + strand, within Synpcc7942_0444at 434.660 kb on - strand, within Synpcc7942_0444at 434.692 kb on - strand, within Synpcc7942_0444at 434.731 kb on - strand, within Synpcc7942_0444at 434.749 kb on + strand, within Synpcc7942_0444at 434.754 kb on - strand, within Synpcc7942_0444at 434.789 kb on + strand, within Synpcc7942_0444at 434.846 kb on - strand, within Synpcc7942_0444at 434.856 kb on - strand, within Synpcc7942_0444at 434.875 kb on + strand, within Synpcc7942_0444at 434.898 kb on + strand, within Synpcc7942_0444at 434.948 kb on + strand, within Synpcc7942_0444at 435.016 kb on + strandat 435.016 kb on + strandat 435.016 kb on + strandat 435.018 kb on + strandat 435.026 kb on - strandat 435.043 kb on - strandat 435.117 kb on - strandat 435.308 kb on - strandat 435.310 kb on + strandat 435.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.03125 mg/ml
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432,100 + amt1 Synpcc7942_0442 0.43 +1.0
432,140 + amt1 Synpcc7942_0442 0.46 -1.5
432,203 - amt1 Synpcc7942_0442 0.50 +0.4
432,217 + amt1 Synpcc7942_0442 0.51 -0.8
432,222 + amt1 Synpcc7942_0442 0.51 -2.8
432,225 - amt1 Synpcc7942_0442 0.51 +0.9
432,225 - amt1 Synpcc7942_0442 0.51 +0.0
432,230 + amt1 Synpcc7942_0442 0.52 +0.8
432,242 + amt1 Synpcc7942_0442 0.52 +1.0
432,266 - amt1 Synpcc7942_0442 0.54 +0.5
432,297 - amt1 Synpcc7942_0442 0.56 -0.8
432,297 - amt1 Synpcc7942_0442 0.56 -1.0
432,297 - amt1 Synpcc7942_0442 0.56 -3.1
432,359 + amt1 Synpcc7942_0442 0.60 +0.5
432,378 - amt1 Synpcc7942_0442 0.62 -3.9
432,404 + amt1 Synpcc7942_0442 0.63 +0.0
432,404 + amt1 Synpcc7942_0442 0.63 -1.0
432,412 - amt1 Synpcc7942_0442 0.64 -1.0
432,412 - amt1 Synpcc7942_0442 0.64 +0.0
432,412 - amt1 Synpcc7942_0442 0.64 +0.0
432,414 + amt1 Synpcc7942_0442 0.64 +0.0
432,435 - amt1 Synpcc7942_0442 0.65 -0.7
432,457 - amt1 Synpcc7942_0442 0.67 +0.0
432,469 + amt1 Synpcc7942_0442 0.68 -1.0
432,477 + amt1 Synpcc7942_0442 0.68 +0.2
432,516 - amt1 Synpcc7942_0442 0.71 -0.6
432,538 + amt1 Synpcc7942_0442 0.72 +1.9
432,609 - amt1 Synpcc7942_0442 0.77 -1.0
432,696 + amt1 Synpcc7942_0442 0.83 +1.6
432,717 + amt1 Synpcc7942_0442 0.84 +0.1
432,717 + amt1 Synpcc7942_0442 0.84 -0.9
432,717 + amt1 Synpcc7942_0442 0.84 -2.3
432,725 - amt1 Synpcc7942_0442 0.85 +0.8
432,725 - amt1 Synpcc7942_0442 0.85 +0.8
432,727 + amt1 Synpcc7942_0442 0.85 +0.0
432,738 - amt1 Synpcc7942_0442 0.86 +2.0
432,777 + amt1 Synpcc7942_0442 0.88 -0.3
432,795 - amt1 Synpcc7942_0442 0.89 -0.4
432,824 - -2.8
432,864 - -1.1
432,865 + +0.0
432,873 - -0.8
432,907 - -0.1
432,928 + +1.2
432,952 + +1.5
433,054 - +0.5
433,057 + +0.6
433,103 + -0.5
433,181 + +2.0
433,181 + -0.4
433,186 + -0.4
433,189 - -1.0
433,189 - -1.8
433,189 - -0.5
433,189 - +0.6
433,194 - -1.5
433,204 - Synpcc7942_0443 0.10 -2.3
433,238 - Synpcc7942_0443 0.13 +0.3
433,239 + Synpcc7942_0443 0.13 +2.0
433,245 - Synpcc7942_0443 0.14 -0.4
433,265 + +1.3
433,270 - Synpcc7942_0443 0.16 +0.0
433,273 - Synpcc7942_0443 0.16 -1.5
433,281 + Synpcc7942_0443 0.17 -1.5
433,288 - Synpcc7942_0443 0.17 -0.2
433,288 - Synpcc7942_0443 0.17 +1.0
433,305 - Synpcc7942_0443 0.18 -1.0
433,307 + Synpcc7942_0443 0.19 +2.4
433,309 + Synpcc7942_0443 0.19 -0.3
433,315 - Synpcc7942_0443 0.19 -0.4
433,325 - Synpcc7942_0443 0.20 +1.9
433,346 + Synpcc7942_0443 0.22 -1.5
433,373 + Synpcc7942_0443 0.24 -0.3
433,376 - Synpcc7942_0443 0.24 +0.7
433,506 + Synpcc7942_0443 0.35 -3.7
433,512 - Synpcc7942_0443 0.35 +0.7
433,516 + Synpcc7942_0443 0.35 +0.4
433,594 + Synpcc7942_0443 0.42 +0.7
433,594 + Synpcc7942_0443 0.42 +0.9
433,602 - Synpcc7942_0443 0.42 -0.4
433,602 - Synpcc7942_0443 0.42 +1.7
433,603 - Synpcc7942_0443 0.42 -1.3
433,674 + Synpcc7942_0443 0.48 -2.0
433,680 + Synpcc7942_0443 0.49 -0.5
433,750 + Synpcc7942_0443 0.54 -0.3
433,763 - Synpcc7942_0443 0.55 +0.5
433,778 - Synpcc7942_0443 0.57 +0.1
433,788 - +0.0
433,811 + Synpcc7942_0443 0.59 +0.5
433,811 + Synpcc7942_0443 0.59 +0.0
433,876 + Synpcc7942_0443 0.64 -1.0
433,882 + Synpcc7942_0443 0.65 +0.6
433,890 - Synpcc7942_0443 0.66 +0.4
433,890 - Synpcc7942_0443 0.66 +0.3
433,918 - Synpcc7942_0443 0.68 +0.4
433,920 - Synpcc7942_0443 0.68 +0.2
433,957 - Synpcc7942_0443 0.71 +1.1
434,009 - Synpcc7942_0443 0.75 +1.1
434,104 + Synpcc7942_0443 0.83 +0.6
434,112 - Synpcc7942_0443 0.83 +0.0
434,153 - Synpcc7942_0443 0.87 +1.3
434,174 + Synpcc7942_0443 0.88 -0.4
434,182 - Synpcc7942_0443 0.89 +0.0
434,182 - Synpcc7942_0443 0.89 -2.0
434,182 - Synpcc7942_0443 0.89 +0.5
434,211 + +1.0
434,217 + -0.8
434,221 + +0.4
434,226 - -0.3
434,227 + -0.8
434,236 + -0.4
434,243 - -0.4
434,244 - +0.5
434,251 - -0.6
434,262 - -0.2
434,306 + +0.0
434,312 + +3.4
434,315 + +0.0
434,343 + +1.0
434,349 + +0.0
434,361 - +2.2
434,378 + -1.0
434,383 + +0.0
434,383 + -0.3
434,391 - -0.5
434,506 - Synpcc7942_0444 0.22 -1.0
434,516 + Synpcc7942_0444 0.23 +0.8
434,516 + Synpcc7942_0444 0.23 +1.0
434,516 + Synpcc7942_0444 0.23 +0.2
434,522 - Synpcc7942_0444 0.24 -0.3
434,523 + Synpcc7942_0444 0.24 +0.9
434,524 - Synpcc7942_0444 0.24 -0.4
434,524 - Synpcc7942_0444 0.24 +1.1
434,524 - Synpcc7942_0444 0.24 -0.5
434,526 + Synpcc7942_0444 0.25 -0.3
434,526 + Synpcc7942_0444 0.25 -1.0
434,528 + Synpcc7942_0444 0.25 -0.7
434,533 + Synpcc7942_0444 0.26 -0.4
434,534 - Synpcc7942_0444 0.26 +0.2
434,541 - Synpcc7942_0444 0.27 -1.1
434,567 - Synpcc7942_0444 0.31 +0.0
434,652 + Synpcc7942_0444 0.43 +0.0
434,660 - Synpcc7942_0444 0.44 -1.4
434,692 - Synpcc7942_0444 0.49 -1.5
434,731 - Synpcc7942_0444 0.55 +0.0
434,749 + Synpcc7942_0444 0.57 +0.5
434,754 - Synpcc7942_0444 0.58 -0.3
434,789 + Synpcc7942_0444 0.63 -0.4
434,846 - Synpcc7942_0444 0.71 -1.0
434,856 - Synpcc7942_0444 0.73 -3.0
434,875 + Synpcc7942_0444 0.76 +0.6
434,898 + Synpcc7942_0444 0.79 -0.8
434,948 + Synpcc7942_0444 0.86 +4.0
435,016 + -2.0
435,016 + +0.0
435,016 + -1.1
435,018 + -0.3
435,026 - +0.3
435,043 - +0.9
435,117 - +1.0
435,308 - -0.1
435,310 + -0.3
435,310 + -0.1

Or see this region's nucleotide sequence