Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4437

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4436 and Pf1N1B4_4437 are separated by 74 nucleotidesPf1N1B4_4437 and Pf1N1B4_4438 are separated by 82 nucleotides Pf1N1B4_4436 - Glutaminase (EC 3.5.1.2), at 4,896,181 to 4,897,089 _4436 Pf1N1B4_4437 - hypothetical protein, at 4,897,164 to 4,898,282 _4437 Pf1N1B4_4438 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 4,898,365 to 4,899,867 _4438 Position (kb) 4897 4898 4899Strain fitness (log2 ratio) -2 -1 0 1at 4896.250 kb on + strandat 4896.250 kb on + strandat 4896.251 kb on - strandat 4896.302 kb on - strand, within Pf1N1B4_4436at 4896.646 kb on + strand, within Pf1N1B4_4436at 4896.736 kb on + strand, within Pf1N1B4_4436at 4896.892 kb on + strandat 4896.892 kb on + strand, within Pf1N1B4_4436at 4897.437 kb on + strand, within Pf1N1B4_4437at 4897.455 kb on + strand, within Pf1N1B4_4437at 4897.712 kb on + strand, within Pf1N1B4_4437at 4897.712 kb on + strand, within Pf1N1B4_4437at 4897.960 kb on + strand, within Pf1N1B4_4437at 4897.960 kb on + strand, within Pf1N1B4_4437at 4897.960 kb on + strand, within Pf1N1B4_4437at 4897.961 kb on - strand, within Pf1N1B4_4437at 4897.961 kb on - strand, within Pf1N1B4_4437at 4898.205 kb on + strandat 4898.206 kb on - strandat 4898.921 kb on + strand, within Pf1N1B4_4438at 4898.922 kb on - strand, within Pf1N1B4_4438at 4898.922 kb on - strand, within Pf1N1B4_4438

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
4,896,250 + +0.6
4,896,250 + -0.8
4,896,251 - -2.4
4,896,302 - Pf1N1B4_4436 0.13 -1.2
4,896,646 + Pf1N1B4_4436 0.51 -0.8
4,896,736 + Pf1N1B4_4436 0.61 -1.0
4,896,892 + +1.6
4,896,892 + Pf1N1B4_4436 0.78 -2.7
4,897,437 + Pf1N1B4_4437 0.24 -0.8
4,897,455 + Pf1N1B4_4437 0.26 -1.4
4,897,712 + Pf1N1B4_4437 0.49 -0.4
4,897,712 + Pf1N1B4_4437 0.49 -2.0
4,897,960 + Pf1N1B4_4437 0.71 -2.4
4,897,960 + Pf1N1B4_4437 0.71 +0.0
4,897,960 + Pf1N1B4_4437 0.71 -0.8
4,897,961 - Pf1N1B4_4437 0.71 -0.4
4,897,961 - Pf1N1B4_4437 0.71 -0.4
4,898,205 + -0.4
4,898,206 - -0.4
4,898,921 + Pf1N1B4_4438 0.37 +0.6
4,898,922 - Pf1N1B4_4438 0.37 +1.2
4,898,922 - Pf1N1B4_4438 0.37 +0.0

Or see this region's nucleotide sequence