Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3843

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3842 and Pf1N1B4_3843 are separated by 302 nucleotidesPf1N1B4_3843 and Pf1N1B4_3844 are separated by 530 nucleotides Pf1N1B4_3842 - Dihydroorotate dehydrogenase (EC 1.3.3.1), at 4,259,609 to 4,260,628 _3842 Pf1N1B4_3843 - Ribosome modulation factor, at 4,260,931 to 4,261,146 _3843 Pf1N1B4_3844 - 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-), at 4,261,677 to 4,263,947 _3844 Position (kb) 4260 4261 4262Strain fitness (log2 ratio) -2 -1 0 1 2at 4260.612 kb on + strandat 4260.653 kb on + strandat 4260.654 kb on - strandat 4260.726 kb on + strandat 4260.726 kb on + strandat 4260.809 kb on + strandat 4260.809 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.811 kb on + strandat 4260.812 kb on - strandat 4260.884 kb on + strandat 4260.885 kb on - strandat 4260.885 kb on - strandat 4260.930 kb on - strandat 4260.985 kb on - strand, within Pf1N1B4_3843at 4261.053 kb on + strand, within Pf1N1B4_3843at 4261.053 kb on + strand, within Pf1N1B4_3843at 4261.054 kb on - strand, within Pf1N1B4_3843at 4261.054 kb on - strand, within Pf1N1B4_3843at 4261.054 kb on - strand, within Pf1N1B4_3843at 4261.092 kb on - strand, within Pf1N1B4_3843at 4261.134 kb on + strandat 4261.134 kb on + strandat 4261.134 kb on + strandat 4261.338 kb on + strandat 4261.365 kb on + strandat 4261.374 kb on - strandat 4261.374 kb on - strandat 4261.475 kb on + strandat 4261.538 kb on + strandat 4261.538 kb on + strandat 4261.538 kb on + strandat 4261.538 kb on + strandat 4261.539 kb on - strandat 4261.539 kb on - strandat 4261.539 kb on - strandat 4261.539 kb on - strandat 4261.539 kb on - strandat 4261.539 kb on - strandat 4261.548 kb on + strandat 4261.654 kb on + strandat 4261.654 kb on + strandat 4261.654 kb on + strandat 4261.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,260,612 + -0.6
4,260,653 + -1.2
4,260,654 - +1.8
4,260,726 + +0.5
4,260,726 + +2.0
4,260,809 + -1.2
4,260,809 + +1.4
4,260,811 + -1.2
4,260,811 + +1.4
4,260,811 + -0.8
4,260,811 + +0.8
4,260,811 + -0.2
4,260,811 + +0.2
4,260,811 + +0.2
4,260,811 + +0.8
4,260,811 + +0.8
4,260,812 - -0.2
4,260,884 + -0.6
4,260,885 - -1.8
4,260,885 - -0.2
4,260,930 - +0.4
4,260,985 - Pf1N1B4_3843 0.25 +0.2
4,261,053 + Pf1N1B4_3843 0.56 +0.4
4,261,053 + Pf1N1B4_3843 0.56 -0.2
4,261,054 - Pf1N1B4_3843 0.57 +0.4
4,261,054 - Pf1N1B4_3843 0.57 -0.7
4,261,054 - Pf1N1B4_3843 0.57 -0.1
4,261,092 - Pf1N1B4_3843 0.75 +0.8
4,261,134 + -1.8
4,261,134 + +0.1
4,261,134 + -0.6
4,261,338 + +0.2
4,261,365 + -0.9
4,261,374 - -0.2
4,261,374 - +2.6
4,261,475 + +0.2
4,261,538 + -0.2
4,261,538 + +1.0
4,261,538 + -0.2
4,261,538 + -0.5
4,261,539 - -0.2
4,261,539 - -1.2
4,261,539 - +0.4
4,261,539 - +2.4
4,261,539 - -0.8
4,261,539 - -0.8
4,261,548 + +1.4
4,261,654 + -1.4
4,261,654 + -0.2
4,261,654 + +0.8
4,261,673 + -0.8

Or see this region's nucleotide sequence