Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06335

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06333 and H281DRAFT_06334 overlap by 1 nucleotidesH281DRAFT_06334 and H281DRAFT_06335 overlap by 4 nucleotidesH281DRAFT_06335 and H281DRAFT_06336 are separated by 143 nucleotides H281DRAFT_06333: H281DRAFT_06333 - peptide/nickel transport system ATP-binding protein, at 6,269 to 8,113 _06333 H281DRAFT_06334: H281DRAFT_06334 - peptide/nickel transport system permease protein, at 8,113 to 9,060 _06334 H281DRAFT_06335: H281DRAFT_06335 - peptide/nickel transport system permease protein, at 9,057 to 10,010 _06335 H281DRAFT_06336: H281DRAFT_06336 - peptide/nickel transport system substrate-binding protein, at 10,154 to 11,770 _06336 Position (kb) 9 10 11Strain fitness (log2 ratio) -1 0 1 2at 8.402 kb on + strand, within H281DRAFT_06334at 8.441 kb on + strand, within H281DRAFT_06334at 8.442 kb on - strand, within H281DRAFT_06334at 8.502 kb on - strand, within H281DRAFT_06334at 8.792 kb on + strand, within H281DRAFT_06334at 8.793 kb on - strand, within H281DRAFT_06334at 8.835 kb on - strand, within H281DRAFT_06334at 8.835 kb on - strand, within H281DRAFT_06334at 9.008 kb on + strandat 9.010 kb on + strandat 9.011 kb on - strandat 9.046 kb on - strandat 9.365 kb on - strand, within H281DRAFT_06335at 9.499 kb on + strand, within H281DRAFT_06335at 9.499 kb on + strand, within H281DRAFT_06335at 10.156 kb on - strandat 10.241 kb on - strandat 10.242 kb on + strandat 10.665 kb on + strand, within H281DRAFT_06336at 10.806 kb on + strand, within H281DRAFT_06336

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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8,402 + H281DRAFT_06334 0.30 +0.4
8,441 + H281DRAFT_06334 0.35 +0.8
8,442 - H281DRAFT_06334 0.35 -0.3
8,502 - H281DRAFT_06334 0.41 +0.9
8,792 + H281DRAFT_06334 0.72 +2.7
8,793 - H281DRAFT_06334 0.72 -0.2
8,835 - H281DRAFT_06334 0.76 -1.3
8,835 - H281DRAFT_06334 0.76 +0.7
9,008 + +0.4
9,010 + -0.6
9,011 - -0.7
9,046 - +0.9
9,365 - H281DRAFT_06335 0.32 +0.5
9,499 + H281DRAFT_06335 0.46 +2.1
9,499 + H281DRAFT_06335 0.46 +0.1
10,156 - +0.1
10,241 - +0.5
10,242 + +0.4
10,665 + H281DRAFT_06336 0.32 +0.1
10,806 + H281DRAFT_06336 0.40 +0.2

Or see this region's nucleotide sequence