Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05769

Experiment: D-Glucose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05767 and H281DRAFT_05768 are separated by 49 nucleotidesH281DRAFT_05768 and H281DRAFT_05769 are separated by 2 nucleotidesH281DRAFT_05769 and H281DRAFT_05770 are separated by 12 nucleotides H281DRAFT_05767: H281DRAFT_05767 - flagellar basal-body rod protein FlgG, at 40,467 to 41,255 _05767 H281DRAFT_05768: H281DRAFT_05768 - flagellar L-ring protein precursor FlgH, at 41,305 to 42,003 _05768 H281DRAFT_05769: H281DRAFT_05769 - flagellar P-ring protein precursor FlgI, at 42,006 to 43,187 _05769 H281DRAFT_05770: H281DRAFT_05770 - flagellar protein FlgJ, at 43,200 to 44,204 _05770 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 41.069 kb on + strand, within H281DRAFT_05767at 41.271 kb on + strandat 41.275 kb on + strandat 41.275 kb on + strandat 41.276 kb on - strandat 41.286 kb on - strandat 41.617 kb on - strand, within H281DRAFT_05768at 41.792 kb on + strand, within H281DRAFT_05768at 41.890 kb on + strand, within H281DRAFT_05768at 41.890 kb on + strand, within H281DRAFT_05768at 41.891 kb on - strand, within H281DRAFT_05768at 41.939 kb on - strandat 41.939 kb on - strandat 42.012 kb on - strandat 42.461 kb on + strand, within H281DRAFT_05769at 42.461 kb on + strand, within H281DRAFT_05769at 42.492 kb on + strand, within H281DRAFT_05769at 42.492 kb on + strand, within H281DRAFT_05769at 42.492 kb on + strand, within H281DRAFT_05769at 42.492 kb on + strand, within H281DRAFT_05769at 42.492 kb on + strandat 42.493 kb on - strand, within H281DRAFT_05769at 42.566 kb on + strand, within H281DRAFT_05769at 42.567 kb on - strand, within H281DRAFT_05769at 42.673 kb on - strand, within H281DRAFT_05769at 43.051 kb on + strand, within H281DRAFT_05769at 43.051 kb on + strand, within H281DRAFT_05769at 43.051 kb on + strand, within H281DRAFT_05769at 43.051 kb on + strand, within H281DRAFT_05769at 43.052 kb on - strand, within H281DRAFT_05769at 43.052 kb on - strand, within H281DRAFT_05769at 43.185 kb on + strandat 43.185 kb on + strandat 43.186 kb on - strandat 43.212 kb on - strandat 43.327 kb on + strand, within H281DRAFT_05770at 43.328 kb on - strand, within H281DRAFT_05770at 43.433 kb on + strand, within H281DRAFT_05770at 43.433 kb on + strand, within H281DRAFT_05770at 43.433 kb on + strand, within H281DRAFT_05770at 43.433 kb on + strand, within H281DRAFT_05770at 43.434 kb on - strand, within H281DRAFT_05770at 43.434 kb on - strand, within H281DRAFT_05770at 43.974 kb on + strand, within H281DRAFT_05770at 43.975 kb on - strand, within H281DRAFT_05770at 44.029 kb on - strand, within H281DRAFT_05770at 44.049 kb on + strand, within H281DRAFT_05770at 44.163 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
remove
41,069 + H281DRAFT_05767 0.76 +0.8
41,271 + +0.2
41,275 + +0.9
41,275 + -0.4
41,276 - -0.3
41,286 - +0.1
41,617 - H281DRAFT_05768 0.45 -0.1
41,792 + H281DRAFT_05768 0.70 +0.3
41,890 + H281DRAFT_05768 0.84 +0.8
41,890 + H281DRAFT_05768 0.84 +1.3
41,891 - H281DRAFT_05768 0.84 +0.0
41,939 - +0.1
41,939 - +0.6
42,012 - +2.1
42,461 + H281DRAFT_05769 0.38 +0.4
42,461 + H281DRAFT_05769 0.38 +0.9
42,492 + H281DRAFT_05769 0.41 +0.3
42,492 + H281DRAFT_05769 0.41 +1.4
42,492 + H281DRAFT_05769 0.41 +0.3
42,492 + H281DRAFT_05769 0.41 +0.4
42,492 + +2.7
42,493 - H281DRAFT_05769 0.41 +1.0
42,566 + H281DRAFT_05769 0.47 -1.9
42,567 - H281DRAFT_05769 0.47 -0.0
42,673 - H281DRAFT_05769 0.56 +0.0
43,051 + H281DRAFT_05769 0.88 +1.1
43,051 + H281DRAFT_05769 0.88 +0.3
43,051 + H281DRAFT_05769 0.88 +1.4
43,051 + H281DRAFT_05769 0.88 +0.1
43,052 - H281DRAFT_05769 0.88 +0.7
43,052 - H281DRAFT_05769 0.88 +1.1
43,185 + +0.7
43,185 + +0.0
43,186 - -1.4
43,212 - +0.6
43,327 + H281DRAFT_05770 0.13 +0.4
43,328 - H281DRAFT_05770 0.13 +0.9
43,433 + H281DRAFT_05770 0.23 +1.6
43,433 + H281DRAFT_05770 0.23 -1.0
43,433 + H281DRAFT_05770 0.23 +1.1
43,433 + H281DRAFT_05770 0.23 +1.2
43,434 - H281DRAFT_05770 0.23 +1.8
43,434 - H281DRAFT_05770 0.23 +0.4
43,974 + H281DRAFT_05770 0.77 +0.8
43,975 - H281DRAFT_05770 0.77 +1.1
44,029 - H281DRAFT_05770 0.82 +1.1
44,049 + H281DRAFT_05770 0.84 -0.6
44,163 + +0.8

Or see this region's nucleotide sequence