Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05360

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05358 and H281DRAFT_05359 are separated by 75 nucleotidesH281DRAFT_05359 and H281DRAFT_05360 overlap by 4 nucleotidesH281DRAFT_05360 and H281DRAFT_05361 are separated by 121 nucleotides H281DRAFT_05358: H281DRAFT_05358 - glucose-6-phosphate 1-dehydrogenase, at 110,843 to 112,324 _05358 H281DRAFT_05359: H281DRAFT_05359 - type VI secretion system protein ImpK, at 112,400 to 113,179 _05359 H281DRAFT_05360: H281DRAFT_05360 - type VI secretion system protein ImpJ, at 113,176 to 114,522 _05360 H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309 _05361 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1at 112.241 kb on + strandat 112.242 kb on - strandat 112.242 kb on - strandat 112.323 kb on - strandat 112.323 kb on - strandat 112.381 kb on + strandat 112.381 kb on + strandat 112.494 kb on + strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.795 kb on - strand, within H281DRAFT_05359at 112.935 kb on + strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.106 kb on + strandat 113.107 kb on - strandat 113.172 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.267 kb on + strandat 113.268 kb on - strandat 113.297 kb on + strandat 113.298 kb on - strandat 113.345 kb on + strand, within H281DRAFT_05360at 113.472 kb on + strand, within H281DRAFT_05360at 113.473 kb on - strand, within H281DRAFT_05360at 113.474 kb on + strand, within H281DRAFT_05360at 113.474 kb on + strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.562 kb on - strand, within H281DRAFT_05360at 113.562 kb on - strand, within H281DRAFT_05360at 113.604 kb on + strand, within H281DRAFT_05360at 113.605 kb on - strand, within H281DRAFT_05360at 113.646 kb on - strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.753 kb on + strand, within H281DRAFT_05360at 113.754 kb on - strand, within H281DRAFT_05360at 113.868 kb on - strand, within H281DRAFT_05360at 113.870 kb on - strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.237 kb on + strand, within H281DRAFT_05360at 114.237 kb on + strand, within H281DRAFT_05360at 114.238 kb on - strand, within H281DRAFT_05360at 114.300 kb on - strand, within H281DRAFT_05360at 114.388 kb on + strandat 114.388 kb on + strandat 114.389 kb on - strandat 114.399 kb on + strandat 114.399 kb on + strandat 114.399 kb on + strandat 114.400 kb on - strandat 114.401 kb on + strandat 114.402 kb on - strandat 114.411 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.565 kb on + strandat 114.565 kb on + strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.571 kb on + strandat 114.591 kb on - strandat 114.645 kb on + strandat 114.646 kb on - strandat 114.646 kb on - strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.656 kb on - strandat 114.656 kb on - strandat 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.758 kb on + strand, within H281DRAFT_05361at 114.864 kb on - strand, within H281DRAFT_05361at 114.882 kb on + strand, within H281DRAFT_05361at 114.882 kb on + strandat 114.882 kb on + strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.077 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.239 kb on - strand, within H281DRAFT_05361at 115.272 kb on + strandat 115.272 kb on + strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.303 kb on + strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.322 kb on + strandat 115.346 kb on - strandat 115.346 kb on - strandat 115.366 kb on - strandat 115.392 kb on - strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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112,241 + +0.9
112,242 - +0.0
112,242 - -0.4
112,323 - -1.2
112,323 - -0.8
112,381 + +0.1
112,381 + +0.6
112,494 + H281DRAFT_05359 0.12 +1.0
112,495 - H281DRAFT_05359 0.12 -0.2
112,495 - H281DRAFT_05359 0.12 -0.5
112,495 - H281DRAFT_05359 0.12 -0.1
112,674 + H281DRAFT_05359 0.35 +0.5
112,674 + H281DRAFT_05359 0.35 +0.6
112,704 + H281DRAFT_05359 0.39 -0.0
112,704 + H281DRAFT_05359 0.39 -0.1
112,704 + H281DRAFT_05359 0.39 -0.3
112,704 + H281DRAFT_05359 0.39 -1.2
112,705 - H281DRAFT_05359 0.39 -0.7
112,705 - H281DRAFT_05359 0.39 -0.4
112,705 - H281DRAFT_05359 0.39 -0.3
112,705 - H281DRAFT_05359 0.39 -0.2
112,705 - H281DRAFT_05359 0.39 -0.3
112,705 - H281DRAFT_05359 0.39 +0.0
112,705 - H281DRAFT_05359 0.39 +0.2
112,705 - H281DRAFT_05359 0.39 -1.1
112,795 - H281DRAFT_05359 0.51 +0.6
112,935 + H281DRAFT_05359 0.69 -0.1
112,936 - H281DRAFT_05359 0.69 -1.0
112,936 - H281DRAFT_05359 0.69 -0.4
113,077 - H281DRAFT_05359 0.87 +0.1
113,077 - H281DRAFT_05359 0.87 +0.3
113,106 + +0.4
113,107 - -0.2
113,172 + +0.2
113,231 + +0.3
113,231 + -0.2
113,231 + +0.0
113,231 + -0.6
113,231 + -1.5
113,232 - +1.2
113,232 - -0.0
113,232 - -0.3
113,232 - +0.4
113,267 + -1.0
113,268 - -0.2
113,297 + -0.2
113,298 - -0.1
113,345 + H281DRAFT_05360 0.13 -0.1
113,472 + H281DRAFT_05360 0.22 -0.1
113,473 - H281DRAFT_05360 0.22 -0.0
113,474 + H281DRAFT_05360 0.22 +0.9
113,474 + H281DRAFT_05360 0.22 +0.6
113,475 - H281DRAFT_05360 0.22 +0.0
113,475 - H281DRAFT_05360 0.22 -0.8
113,475 - H281DRAFT_05360 0.22 +0.8
113,475 - H281DRAFT_05360 0.22 -0.3
113,562 - H281DRAFT_05360 0.29 +0.2
113,562 - H281DRAFT_05360 0.29 +0.8
113,604 + H281DRAFT_05360 0.32 -0.5
113,605 - H281DRAFT_05360 0.32 -0.4
113,646 - H281DRAFT_05360 0.35 +0.2
113,669 + H281DRAFT_05360 0.37 -0.4
113,669 + H281DRAFT_05360 0.37 -1.7
113,670 - H281DRAFT_05360 0.37 -0.0
113,670 - H281DRAFT_05360 0.37 -0.1
113,753 + H281DRAFT_05360 0.43 +1.2
113,754 - H281DRAFT_05360 0.43 +0.1
113,868 - H281DRAFT_05360 0.51 -0.9
113,870 - H281DRAFT_05360 0.52 -0.9
114,143 + H281DRAFT_05360 0.72 +0.4
114,143 + H281DRAFT_05360 0.72 +0.2
114,143 + H281DRAFT_05360 0.72 +0.3
114,179 + H281DRAFT_05360 0.74 -0.2
114,179 + H281DRAFT_05360 0.74 +1.5
114,179 + H281DRAFT_05360 0.74 -0.2
114,179 + H281DRAFT_05360 0.74 -0.0
114,237 + H281DRAFT_05360 0.79 +0.2
114,237 + H281DRAFT_05360 0.79 +0.4
114,238 - H281DRAFT_05360 0.79 -0.4
114,300 - H281DRAFT_05360 0.83 +0.3
114,388 + -0.1
114,388 + -0.4
114,389 - -0.2
114,399 + +0.1
114,399 + +0.6
114,399 + -0.6
114,400 - +0.3
114,401 + -0.4
114,402 - +0.9
114,411 + -0.7
114,534 + -0.5
114,534 + +0.8
114,534 + -0.3
114,534 + -0.1
114,535 - +0.1
114,535 - -0.5
114,535 - +0.0
114,535 - -0.1
114,565 + -0.2
114,565 + -0.2
114,566 - -0.1
114,566 - +0.2
114,566 - -0.2
114,566 - -0.1
114,571 + -0.4
114,591 - -0.2
114,645 + +0.2
114,646 - +0.5
114,646 - -0.2
114,655 + +0.1
114,655 + +0.5
114,655 + +0.3
114,656 - -0.1
114,656 - -0.3
114,742 + H281DRAFT_05361 0.15 -0.7
114,742 + H281DRAFT_05361 0.15 +0.0
114,742 + H281DRAFT_05361 0.15 +0.6
114,742 + H281DRAFT_05361 0.15 -0.1
114,742 + H281DRAFT_05361 0.15 -0.4
114,743 - H281DRAFT_05361 0.15 +0.3
114,743 - H281DRAFT_05361 0.15 +0.1
114,758 + H281DRAFT_05361 0.17 +0.1
114,864 - H281DRAFT_05361 0.33 +0.3
114,882 + H281DRAFT_05361 0.36 +0.1
114,882 + -1.2
114,882 + H281DRAFT_05361 0.36 -0.1
114,939 - H281DRAFT_05361 0.44 -0.9
114,939 - H281DRAFT_05361 0.44 +1.0
115,014 + H281DRAFT_05361 0.56 +0.3
115,014 + H281DRAFT_05361 0.56 +1.5
115,014 + H281DRAFT_05361 0.56 -0.2
115,014 + H281DRAFT_05361 0.56 +0.0
115,077 + H281DRAFT_05361 0.65 -1.0
115,079 + H281DRAFT_05361 0.65 -0.2
115,079 + H281DRAFT_05361 0.65 +0.1
115,080 - H281DRAFT_05361 0.65 +0.4
115,080 - H281DRAFT_05361 0.65 +0.7
115,080 - H281DRAFT_05361 0.65 +0.1
115,239 - H281DRAFT_05361 0.89 -0.4
115,272 + +0.1
115,272 + +0.5
115,273 - -0.1
115,273 - -0.2
115,273 - -0.2
115,273 - +0.1
115,273 - -1.0
115,303 + +0.7
115,304 - +0.1
115,304 - +0.5
115,304 - +0.2
115,322 + +1.2
115,346 - -0.2
115,346 - +0.5
115,366 - +1.1
115,392 - -0.7
115,403 + +0.1
115,403 + -0.2
115,403 + -1.2
115,404 - -0.4
115,404 - -0.5
115,404 - -0.9
115,509 - +0.4

Or see this region's nucleotide sequence