Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01731

Experiment: D-Glucose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01730 and H281DRAFT_01731 are separated by 152 nucleotidesH281DRAFT_01731 and H281DRAFT_01732 are separated by 346 nucleotides H281DRAFT_01730: H281DRAFT_01730 - Predicted oxidoreductase, at 618,862 to 619,845 _01730 H281DRAFT_01731: H281DRAFT_01731 - protein of unknown function (DUF4148), at 619,998 to 620,315 _01731 H281DRAFT_01732: H281DRAFT_01732 - Multidrug efflux pump subunit AcrB, at 620,662 to 623,856 _01732 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1 2at 618.999 kb on + strand, within H281DRAFT_01730at 619.246 kb on + strand, within H281DRAFT_01730at 619.246 kb on + strand, within H281DRAFT_01730at 619.309 kb on + strand, within H281DRAFT_01730at 619.387 kb on + strand, within H281DRAFT_01730at 619.387 kb on + strand, within H281DRAFT_01730at 620.011 kb on + strandat 620.094 kb on - strand, within H281DRAFT_01731at 620.095 kb on + strand, within H281DRAFT_01731at 620.096 kb on - strand, within H281DRAFT_01731at 620.096 kb on - strand, within H281DRAFT_01731at 620.096 kb on - strand, within H281DRAFT_01731at 620.099 kb on + strandat 620.105 kb on + strand, within H281DRAFT_01731at 620.106 kb on - strand, within H281DRAFT_01731at 620.670 kb on - strandat 620.695 kb on + strandat 620.812 kb on + strandat 621.125 kb on - strand, within H281DRAFT_01732at 621.158 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
remove
618,999 + H281DRAFT_01730 0.14 -0.1
619,246 + H281DRAFT_01730 0.39 +0.8
619,246 + H281DRAFT_01730 0.39 -0.9
619,309 + H281DRAFT_01730 0.45 +1.5
619,387 + H281DRAFT_01730 0.53 +0.7
619,387 + H281DRAFT_01730 0.53 -0.2
620,011 + +0.7
620,094 - H281DRAFT_01731 0.30 +0.1
620,095 + H281DRAFT_01731 0.31 +1.4
620,096 - H281DRAFT_01731 0.31 -0.1
620,096 - H281DRAFT_01731 0.31 +0.2
620,096 - H281DRAFT_01731 0.31 +0.3
620,099 + +0.4
620,105 + H281DRAFT_01731 0.34 +1.3
620,106 - H281DRAFT_01731 0.34 +0.4
620,670 - -0.3
620,695 + +0.1
620,812 + +2.5
621,125 - H281DRAFT_01732 0.14 -0.0
621,158 + +2.0

Or see this region's nucleotide sequence