Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01436

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01435 and H281DRAFT_01436 overlap by 4 nucleotidesH281DRAFT_01436 and H281DRAFT_01437 are separated by 375 nucleotides H281DRAFT_01435: H281DRAFT_01435 - H+/gluconate symporter, at 292,716 to 294,215 _01435 H281DRAFT_01436: H281DRAFT_01436 - NTE family protein, at 294,212 to 295,270 _01436 H281DRAFT_01437: H281DRAFT_01437 - hypothetical protein, at 295,646 to 296,875 _01437 Position (kb) 294 295 296Strain fitness (log2 ratio) -2 -1 0 1 2at 293.321 kb on - strand, within H281DRAFT_01435at 293.727 kb on - strand, within H281DRAFT_01435at 293.874 kb on + strand, within H281DRAFT_01435at 294.111 kb on + strandat 294.112 kb on - strandat 294.165 kb on - strandat 294.328 kb on + strand, within H281DRAFT_01436at 294.802 kb on + strand, within H281DRAFT_01436at 295.307 kb on - strandat 295.321 kb on - strandat 295.571 kb on - strandat 295.571 kb on - strandat 295.573 kb on - strandat 295.743 kb on - strandat 295.743 kb on - strandat 295.746 kb on + strandat 295.827 kb on - strand, within H281DRAFT_01437at 295.870 kb on - strand, within H281DRAFT_01437at 295.988 kb on - strand, within H281DRAFT_01437at 295.991 kb on + strand, within H281DRAFT_01437

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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293,321 - H281DRAFT_01435 0.40 -0.3
293,727 - H281DRAFT_01435 0.67 -0.1
293,874 + H281DRAFT_01435 0.77 -1.3
294,111 + -1.8
294,112 - -0.1
294,165 - -1.2
294,328 + H281DRAFT_01436 0.11 +1.0
294,802 + H281DRAFT_01436 0.56 +0.5
295,307 - -0.2
295,321 - +1.3
295,571 - +0.4
295,571 - -0.2
295,573 - -0.4
295,743 - -0.2
295,743 - +2.3
295,746 + -0.9
295,827 - H281DRAFT_01437 0.15 +0.9
295,870 - H281DRAFT_01437 0.18 +0.8
295,988 - H281DRAFT_01437 0.28 -0.4
295,991 + H281DRAFT_01437 0.28 +0.8

Or see this region's nucleotide sequence