Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01422

Experiment: D-Glucose 20 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01420 and H281DRAFT_01421 are separated by 460 nucleotidesH281DRAFT_01421 and H281DRAFT_01422 overlap by 51 nucleotidesH281DRAFT_01422 and H281DRAFT_01423 are separated by 32 nucleotides H281DRAFT_01420: H281DRAFT_01420 - oxidoreductase alpha (molybdopterin) subunit, at 275,609 to 278,026 _01420 H281DRAFT_01421: H281DRAFT_01421 - hypothetical protein, at 278,487 to 278,891 _01421 H281DRAFT_01422: H281DRAFT_01422 - hypothetical protein, at 278,841 to 279,140 _01422 H281DRAFT_01423: H281DRAFT_01423 - hypothetical protein, at 279,173 to 279,940 _01423 Position (kb) 278 279 280Strain fitness (log2 ratio) -1 0 1 2at 278.009 kb on + strandat 278.171 kb on + strandat 278.212 kb on + strandat 278.213 kb on - strandat 278.435 kb on + strandat 278.435 kb on + strandat 278.436 kb on - strandat 278.465 kb on - strandat 278.465 kb on - strandat 278.498 kb on + strandat 278.499 kb on - strandat 278.501 kb on - strandat 278.642 kb on - strand, within H281DRAFT_01421at 278.874 kb on - strandat 278.878 kb on + strandat 278.929 kb on + strand, within H281DRAFT_01422at 278.943 kb on - strand, within H281DRAFT_01422at 278.952 kb on - strand, within H281DRAFT_01422at 279.057 kb on + strand, within H281DRAFT_01422at 279.057 kb on + strand, within H281DRAFT_01422at 279.131 kb on + strandat 279.132 kb on - strandat 279.175 kb on - strandat 279.429 kb on + strand, within H281DRAFT_01423at 279.457 kb on + strand, within H281DRAFT_01423at 279.569 kb on - strand, within H281DRAFT_01423at 279.592 kb on - strand, within H281DRAFT_01423at 279.733 kb on - strand, within H281DRAFT_01423at 279.956 kb on + strandat 279.960 kb on + strandat 279.961 kb on - strandat 279.961 kb on - strandat 280.034 kb on - strandat 280.109 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
remove
278,009 + -0.1
278,171 + +0.5
278,212 + -0.0
278,213 - +0.3
278,435 + +0.3
278,435 + +2.0
278,436 - -0.8
278,465 - +1.1
278,465 - -0.1
278,498 + +0.7
278,499 - +0.5
278,501 - +0.4
278,642 - H281DRAFT_01421 0.38 -0.3
278,874 - -0.2
278,878 + +0.9
278,929 + H281DRAFT_01422 0.29 +1.1
278,943 - H281DRAFT_01422 0.34 +0.1
278,952 - H281DRAFT_01422 0.37 +0.6
279,057 + H281DRAFT_01422 0.72 +1.3
279,057 + H281DRAFT_01422 0.72 -0.0
279,131 + +0.4
279,132 - -0.4
279,175 - -0.2
279,429 + H281DRAFT_01423 0.33 -0.2
279,457 + H281DRAFT_01423 0.37 +0.0
279,569 - H281DRAFT_01423 0.52 -0.2
279,592 - H281DRAFT_01423 0.55 +0.6
279,733 - H281DRAFT_01423 0.73 +0.5
279,956 + +0.4
279,960 + -0.3
279,961 - +1.2
279,961 - +1.0
280,034 - -0.1
280,109 - -0.0

Or see this region's nucleotide sequence