Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01064

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01062 and H281DRAFT_01063 are separated by 462 nucleotidesH281DRAFT_01063 and H281DRAFT_01064 are separated by 2 nucleotidesH281DRAFT_01064 and H281DRAFT_01065 are separated by 545 nucleotides H281DRAFT_01062: H281DRAFT_01062 - hypothetical protein, at 1,193,001 to 1,193,606 _01062 H281DRAFT_01063: H281DRAFT_01063 - hypothetical protein, at 1,194,069 to 1,194,452 _01063 H281DRAFT_01064: H281DRAFT_01064 - Tetratricopeptide (TPR) repeat, at 1,194,455 to 1,196,017 _01064 H281DRAFT_01065: H281DRAFT_01065 - NitT/TauT family transport system substrate-binding protein, at 1,196,563 to 1,197,543 _01065 Position (kb) 1194 1195 1196 1197Strain fitness (log2 ratio) -1 0 1at 1193.466 kb on + strand, within H281DRAFT_01062at 1193.536 kb on - strand, within H281DRAFT_01062at 1193.596 kb on + strandat 1193.920 kb on - strandat 1194.149 kb on + strand, within H281DRAFT_01063at 1194.292 kb on + strand, within H281DRAFT_01063at 1194.317 kb on - strand, within H281DRAFT_01063at 1194.336 kb on + strand, within H281DRAFT_01063at 1194.801 kb on + strand, within H281DRAFT_01064at 1194.882 kb on - strand, within H281DRAFT_01064at 1195.234 kb on - strandat 1195.234 kb on - strand, within H281DRAFT_01064at 1195.279 kb on - strand, within H281DRAFT_01064at 1195.487 kb on + strand, within H281DRAFT_01064at 1195.569 kb on + strand, within H281DRAFT_01064at 1195.570 kb on - strand, within H281DRAFT_01064at 1195.612 kb on + strand, within H281DRAFT_01064at 1195.681 kb on - strand, within H281DRAFT_01064at 1195.753 kb on + strand, within H281DRAFT_01064at 1195.756 kb on + strand, within H281DRAFT_01064at 1195.757 kb on - strand, within H281DRAFT_01064at 1195.910 kb on - strandat 1196.073 kb on - strandat 1196.143 kb on + strandat 1196.144 kb on - strandat 1196.144 kb on - strandat 1196.324 kb on - strandat 1196.325 kb on + strandat 1196.326 kb on - strandat 1196.570 kb on + strandat 1196.719 kb on + strand, within H281DRAFT_01065at 1197.008 kb on - strand, within H281DRAFT_01065

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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1,193,466 + H281DRAFT_01062 0.77 +0.2
1,193,536 - H281DRAFT_01062 0.88 +0.0
1,193,596 + +0.0
1,193,920 - -0.0
1,194,149 + H281DRAFT_01063 0.21 -0.5
1,194,292 + H281DRAFT_01063 0.58 -0.2
1,194,317 - H281DRAFT_01063 0.65 +0.2
1,194,336 + H281DRAFT_01063 0.70 -0.4
1,194,801 + H281DRAFT_01064 0.22 +0.9
1,194,882 - H281DRAFT_01064 0.27 +0.1
1,195,234 - +0.1
1,195,234 - H281DRAFT_01064 0.50 -0.5
1,195,279 - H281DRAFT_01064 0.53 -1.1
1,195,487 + H281DRAFT_01064 0.66 -0.8
1,195,569 + H281DRAFT_01064 0.71 -1.2
1,195,570 - H281DRAFT_01064 0.71 -1.3
1,195,612 + H281DRAFT_01064 0.74 -0.0
1,195,681 - H281DRAFT_01064 0.78 +0.0
1,195,753 + H281DRAFT_01064 0.83 -0.6
1,195,756 + H281DRAFT_01064 0.83 +0.9
1,195,757 - H281DRAFT_01064 0.83 +0.7
1,195,910 - +0.1
1,196,073 - -0.1
1,196,143 + -0.3
1,196,144 - -0.1
1,196,144 - -0.5
1,196,324 - -0.2
1,196,325 + -0.1
1,196,326 - +0.7
1,196,570 + +1.2
1,196,719 + H281DRAFT_01065 0.16 -1.1
1,197,008 - H281DRAFT_01065 0.45 +0.3

Or see this region's nucleotide sequence