Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00861

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00860 and H281DRAFT_00861 are separated by 321 nucleotidesH281DRAFT_00861 and H281DRAFT_00862 are separated by 161 nucleotides H281DRAFT_00860: H281DRAFT_00860 - phosphoserine phosphatase, at 951,225 to 952,064 _00860 H281DRAFT_00861: H281DRAFT_00861 - hypothetical protein, at 952,386 to 953,630 _00861 H281DRAFT_00862: H281DRAFT_00862 - DNA end-binding protein Ku, at 953,792 to 954,820 _00862 Position (kb) 952 953 954Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 951.570 kb on + strand, within H281DRAFT_00860at 952.118 kb on + strandat 952.201 kb on + strandat 952.322 kb on + strandat 952.322 kb on + strandat 952.322 kb on + strandat 952.323 kb on - strandat 952.372 kb on + strandat 952.372 kb on + strandat 952.372 kb on + strandat 952.373 kb on - strandat 952.373 kb on - strandat 952.461 kb on + strandat 952.567 kb on + strand, within H281DRAFT_00861at 952.567 kb on + strand, within H281DRAFT_00861at 952.567 kb on + strand, within H281DRAFT_00861at 952.623 kb on + strand, within H281DRAFT_00861at 952.992 kb on + strand, within H281DRAFT_00861at 953.687 kb on + strandat 953.800 kb on + strandat 953.800 kb on + strandat 953.800 kb on + strandat 953.801 kb on - strandat 953.801 kb on - strandat 953.801 kb on - strandat 953.924 kb on + strand, within H281DRAFT_00862at 954.005 kb on + strandat 954.005 kb on + strand, within H281DRAFT_00862at 954.005 kb on + strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.068 kb on - strand, within H281DRAFT_00862at 954.159 kb on - strand, within H281DRAFT_00862at 954.425 kb on + strand, within H281DRAFT_00862

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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951,570 + H281DRAFT_00860 0.41 -5.0
952,118 + -3.0
952,201 + +0.5
952,322 + +0.4
952,322 + +0.3
952,322 + -0.2
952,323 - +0.7
952,372 + -0.1
952,372 + +0.7
952,372 + -2.0
952,373 - +0.5
952,373 - -0.6
952,461 + -0.3
952,567 + H281DRAFT_00861 0.15 -0.3
952,567 + H281DRAFT_00861 0.15 -0.8
952,567 + H281DRAFT_00861 0.15 +0.2
952,623 + H281DRAFT_00861 0.19 -0.8
952,992 + H281DRAFT_00861 0.49 -0.1
953,687 + -0.2
953,800 + +0.9
953,800 + +0.6
953,800 + -0.5
953,801 - -0.3
953,801 - +0.2
953,801 - +0.1
953,924 + H281DRAFT_00862 0.13 +0.6
954,005 + +2.0
954,005 + H281DRAFT_00862 0.21 +0.6
954,005 + H281DRAFT_00862 0.21 -0.2
954,006 - H281DRAFT_00862 0.21 +0.8
954,006 - H281DRAFT_00862 0.21 +0.1
954,006 - H281DRAFT_00862 0.21 +0.2
954,068 - H281DRAFT_00862 0.27 -0.1
954,159 - H281DRAFT_00862 0.36 +0.3
954,425 + H281DRAFT_00862 0.62 -0.1

Or see this region's nucleotide sequence