Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00486

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00485 and H281DRAFT_00486 are separated by 235 nucleotidesH281DRAFT_00486 and H281DRAFT_00487 are separated by 103 nucleotides H281DRAFT_00485: H281DRAFT_00485 - Glycine zipper 2TM domain-containing protein, at 542,065 to 542,829 _00485 H281DRAFT_00486: H281DRAFT_00486 - lysyl-tRNA synthetase, class II, at 543,065 to 544,675 _00486 H281DRAFT_00487: H281DRAFT_00487 - bacterial peptide chain release factor 2 (bRF-2), at 544,779 to 546,098 _00487 Position (kb) 543 544 545Strain fitness (log2 ratio) -1 0 1at 542.135 kb on + strandat 542.183 kb on + strand, within H281DRAFT_00485at 542.202 kb on + strand, within H281DRAFT_00485at 542.430 kb on - strand, within H281DRAFT_00485at 542.465 kb on + strand, within H281DRAFT_00485at 542.860 kb on + strandat 542.860 kb on + strandat 542.861 kb on - strandat 542.861 kb on - strandat 542.862 kb on - strandat 542.909 kb on + strandat 542.960 kb on - strandat 542.969 kb on + strandat 542.970 kb on - strandat 543.060 kb on - strandat 543.060 kb on - strandat 544.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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542,135 + -0.3
542,183 + H281DRAFT_00485 0.15 +0.3
542,202 + H281DRAFT_00485 0.18 -0.1
542,430 - H281DRAFT_00485 0.48 +0.0
542,465 + H281DRAFT_00485 0.52 -0.4
542,860 + -0.9
542,860 + +1.1
542,861 - -0.6
542,861 - +0.2
542,862 - +0.3
542,909 + -0.4
542,960 - -0.6
542,969 + +1.1
542,970 - +0.2
543,060 - +0.6
543,060 - -0.4
544,633 - +0.1

Or see this region's nucleotide sequence