Strain Fitness in Dechlorosoma suillum PS around Dsui_3517

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3516 and Dsui_3517 overlap by 4 nucleotidesDsui_3517 and Dsui_3518 are separated by 84 nucleotidesDsui_3518 and Dsui_3519 are separated by 72 nucleotides Dsui_3516: Dsui_3516 - hypothetical protein, at 3,779,723 to 3,781,249 _3516 Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076 _3517 Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523 _3518 Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137 _3519 Position (kb) 3781 3782 3783Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3780.294 kb on + strand, within Dsui_3516at 3780.310 kb on - strandat 3780.310 kb on - strand, within Dsui_3516at 3780.331 kb on - strand, within Dsui_3516at 3780.368 kb on - strand, within Dsui_3516at 3780.427 kb on + strand, within Dsui_3516at 3780.446 kb on - strand, within Dsui_3516at 3780.531 kb on - strand, within Dsui_3516at 3780.585 kb on + strand, within Dsui_3516at 3780.619 kb on - strand, within Dsui_3516at 3780.810 kb on + strand, within Dsui_3516at 3780.818 kb on - strand, within Dsui_3516at 3780.846 kb on + strand, within Dsui_3516at 3780.847 kb on + strand, within Dsui_3516at 3780.854 kb on - strand, within Dsui_3516at 3780.855 kb on - strand, within Dsui_3516at 3780.913 kb on + strand, within Dsui_3516at 3780.915 kb on + strand, within Dsui_3516at 3780.963 kb on - strand, within Dsui_3516at 3781.179 kb on + strandat 3781.187 kb on - strandat 3781.207 kb on + strandat 3781.221 kb on - strandat 3781.315 kb on + strandat 3781.327 kb on - strandat 3781.371 kb on + strand, within Dsui_3517at 3781.379 kb on - strand, within Dsui_3517at 3781.386 kb on - strand, within Dsui_3517at 3781.575 kb on + strand, within Dsui_3517at 3781.605 kb on + strand, within Dsui_3517at 3781.605 kb on + strand, within Dsui_3517at 3781.643 kb on + strand, within Dsui_3517at 3781.728 kb on - strand, within Dsui_3517at 3781.750 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.820 kb on + strand, within Dsui_3517at 3781.823 kb on - strand, within Dsui_3517at 3781.829 kb on - strand, within Dsui_3517at 3781.879 kb on + strandat 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.965 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3782.015 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.109 kb on + strandat 3782.109 kb on + strandat 3782.122 kb on - strandat 3782.171 kb on + strandat 3782.232 kb on - strand, within Dsui_3518at 3782.269 kb on - strand, within Dsui_3518at 3782.325 kb on + strand, within Dsui_3518at 3782.333 kb on - strand, within Dsui_3518at 3782.333 kb on - strand, within Dsui_3518at 3782.369 kb on - strand, within Dsui_3518at 3782.393 kb on + strand, within Dsui_3518at 3782.401 kb on - strand, within Dsui_3518at 3782.404 kb on + strand, within Dsui_3518at 3782.465 kb on - strand, within Dsui_3518at 3782.525 kb on + strandat 3782.525 kb on + strandat 3782.526 kb on - strandat 3782.605 kb on + strandat 3782.605 kb on + strandat 3782.630 kb on + strandat 3782.662 kb on + strandat 3782.670 kb on - strandat 3782.671 kb on - strandat 3782.731 kb on - strandat 3782.831 kb on + strand, within Dsui_3519at 3782.839 kb on + strand, within Dsui_3519at 3782.839 kb on - strand, within Dsui_3519at 3782.847 kb on - strand, within Dsui_3519at 3782.944 kb on - strand, within Dsui_3519at 3782.976 kb on - strand, within Dsui_3519at 3783.007 kb on + strand, within Dsui_3519

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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3,780,294 + Dsui_3516 0.37 +0.1
3,780,310 - -0.6
3,780,310 - Dsui_3516 0.38 +0.4
3,780,331 - Dsui_3516 0.40 -1.0
3,780,368 - Dsui_3516 0.42 -0.5
3,780,427 + Dsui_3516 0.46 +2.3
3,780,446 - Dsui_3516 0.47 -1.2
3,780,531 - Dsui_3516 0.53 -0.3
3,780,585 + Dsui_3516 0.56 +0.9
3,780,619 - Dsui_3516 0.59 -0.8
3,780,810 + Dsui_3516 0.71 +0.7
3,780,818 - Dsui_3516 0.72 +0.2
3,780,846 + Dsui_3516 0.74 +0.9
3,780,847 + Dsui_3516 0.74 +1.1
3,780,854 - Dsui_3516 0.74 +0.4
3,780,855 - Dsui_3516 0.74 +0.5
3,780,913 + Dsui_3516 0.78 +1.2
3,780,915 + Dsui_3516 0.78 +1.7
3,780,963 - Dsui_3516 0.81 +0.4
3,781,179 + -0.4
3,781,187 - +0.8
3,781,207 + +1.1
3,781,221 - +1.2
3,781,315 + +0.5
3,781,327 - +0.5
3,781,371 + Dsui_3517 0.15 +0.5
3,781,379 - Dsui_3517 0.16 +1.5
3,781,386 - Dsui_3517 0.17 +0.3
3,781,575 + Dsui_3517 0.40 -2.4
3,781,605 + Dsui_3517 0.43 +0.4
3,781,605 + Dsui_3517 0.43 +1.8
3,781,643 + Dsui_3517 0.48 +0.8
3,781,728 - Dsui_3517 0.58 +0.5
3,781,750 + Dsui_3517 0.61 +0.4
3,781,773 + Dsui_3517 0.63 -0.7
3,781,773 + Dsui_3517 0.63 -1.0
3,781,820 + Dsui_3517 0.69 -2.3
3,781,823 - Dsui_3517 0.69 +0.7
3,781,829 - Dsui_3517 0.70 -1.5
3,781,879 + -2.4
3,781,880 + -2.3
3,781,880 + Dsui_3517 0.76 -2.2
3,781,880 + +0.7
3,781,880 + Dsui_3517 0.76 -1.2
3,781,888 - Dsui_3517 0.77 -0.4
3,781,888 - Dsui_3517 0.77 +0.8
3,781,888 - Dsui_3517 0.77 +0.4
3,781,888 - Dsui_3517 0.77 +1.4
3,781,965 + Dsui_3517 0.87 -1.0
3,781,973 + Dsui_3517 0.87 -0.5
3,781,973 + Dsui_3517 0.87 -2.3
3,781,981 - Dsui_3517 0.88 +0.6
3,781,981 - Dsui_3517 0.88 +0.9
3,782,015 - +0.8
3,782,065 - -0.0
3,782,065 - +0.6
3,782,065 - +1.9
3,782,109 + +0.0
3,782,109 + -3.8
3,782,122 - -0.1
3,782,171 + -0.5
3,782,232 - Dsui_3518 0.20 +0.6
3,782,269 - Dsui_3518 0.30 +1.7
3,782,325 + Dsui_3518 0.45 -0.5
3,782,333 - Dsui_3518 0.47 +0.4
3,782,333 - Dsui_3518 0.47 -0.5
3,782,369 - Dsui_3518 0.57 +0.5
3,782,393 + Dsui_3518 0.64 +0.0
3,782,401 - Dsui_3518 0.66 +0.6
3,782,404 + Dsui_3518 0.67 -0.4
3,782,465 - Dsui_3518 0.84 +0.4
3,782,525 + +1.0
3,782,525 + +0.4
3,782,526 - +0.8
3,782,605 + +0.0
3,782,605 + -1.4
3,782,630 + +1.1
3,782,662 + -0.1
3,782,670 - +1.0
3,782,671 - +1.2
3,782,731 - +1.2
3,782,831 + Dsui_3519 0.15 +0.4
3,782,839 + Dsui_3519 0.16 +0.7
3,782,839 - Dsui_3519 0.16 +0.7
3,782,847 - Dsui_3519 0.16 +0.3
3,782,944 - Dsui_3519 0.23 +1.2
3,782,976 - Dsui_3519 0.25 +1.0
3,783,007 + Dsui_3519 0.27 -2.1

Or see this region's nucleotide sequence