Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3447 and Dsui_3448 overlap by 1 nucleotides Dsui_3448 and Dsui_3449 are separated by 66 nucleotides Dsui_3449 and Dsui_3450 are separated by 139 nucleotides
Dsui_3447: Dsui_3447 - signal transduction histidine kinase, at 3,706,188 to 3,707,558
_3447
Dsui_3448: Dsui_3448 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,707,558 to 3,708,256
_3448
Dsui_3449: Dsui_3449 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,708,323 to 3,710,467
_3449
Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902
_3450
Position (kb)
3708
3709
3710
3711 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3707.399 kb on + strand at 3707.400 kb on - strand, within Dsui_3447 at 3707.432 kb on + strand at 3707.475 kb on + strand at 3707.633 kb on - strand, within Dsui_3448 at 3707.635 kb on + strand at 3707.824 kb on - strand, within Dsui_3448 at 3707.907 kb on - strand, within Dsui_3448 at 3708.043 kb on - strand, within Dsui_3448 at 3708.103 kb on - strand, within Dsui_3448 at 3708.134 kb on + strand at 3708.137 kb on - strand, within Dsui_3448 at 3708.234 kb on - strand at 3708.266 kb on - strand at 3708.266 kb on - strand at 3708.339 kb on - strand at 3708.667 kb on + strand, within Dsui_3449 at 3708.726 kb on - strand, within Dsui_3449 at 3709.049 kb on - strand at 3709.183 kb on + strand, within Dsui_3449 at 3709.209 kb on + strand, within Dsui_3449 at 3709.223 kb on - strand, within Dsui_3449 at 3709.256 kb on + strand, within Dsui_3449 at 3709.264 kb on - strand at 3709.281 kb on + strand, within Dsui_3449 at 3709.289 kb on - strand at 3709.433 kb on - strand, within Dsui_3449 at 3709.480 kb on + strand, within Dsui_3449 at 3709.562 kb on + strand, within Dsui_3449 at 3709.574 kb on - strand, within Dsui_3449 at 3709.595 kb on + strand, within Dsui_3449 at 3709.857 kb on + strand, within Dsui_3449 at 3709.862 kb on + strand, within Dsui_3449 at 3709.875 kb on - strand, within Dsui_3449 at 3709.937 kb on - strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3710.126 kb on - strand, within Dsui_3449 at 3710.168 kb on - strand, within Dsui_3449 at 3710.359 kb on - strand at 3710.543 kb on + strand at 3710.605 kb on + strand at 3710.613 kb on - strand at 3710.627 kb on - strand at 3710.875 kb on - strand, within Dsui_3450 at 3710.916 kb on + strand, within Dsui_3450 at 3710.921 kb on + strand, within Dsui_3450 at 3710.960 kb on + strand, within Dsui_3450 at 3711.028 kb on + strand, within Dsui_3450 at 3711.056 kb on - strand, within Dsui_3450 at 3711.111 kb on - strand, within Dsui_3450 at 3711.115 kb on + strand, within Dsui_3450 at 3711.163 kb on - strand, within Dsui_3450 at 3711.232 kb on + strand, within Dsui_3450 at 3711.345 kb on - strand, within Dsui_3450 at 3711.347 kb on + strand, within Dsui_3450 at 3711.353 kb on + strand, within Dsui_3450 at 3711.417 kb on - strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.442 kb on - strand, within Dsui_3450
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 3,707,399 + +0.5 3,707,400 - Dsui_3447 0.88 +0.1 3,707,432 + -0.6 3,707,475 + -1.8 3,707,633 - Dsui_3448 0.11 +0.6 3,707,635 + +0.3 3,707,824 - Dsui_3448 0.38 -1.1 3,707,907 - Dsui_3448 0.50 +0.0 3,708,043 - Dsui_3448 0.69 +1.0 3,708,103 - Dsui_3448 0.78 -0.4 3,708,134 + +1.4 3,708,137 - Dsui_3448 0.83 -1.8 3,708,234 - -0.1 3,708,266 - +0.9 3,708,266 - -0.7 3,708,339 - -2.6 3,708,667 + Dsui_3449 0.16 -1.0 3,708,726 - Dsui_3449 0.19 -0.7 3,709,049 - -0.5 3,709,183 + Dsui_3449 0.40 -0.5 3,709,209 + Dsui_3449 0.41 -1.9 3,709,223 - Dsui_3449 0.42 -1.2 3,709,256 + Dsui_3449 0.43 -0.5 3,709,264 - -1.2 3,709,281 + Dsui_3449 0.45 -0.5 3,709,289 - -1.5 3,709,433 - Dsui_3449 0.52 -1.5 3,709,480 + Dsui_3449 0.54 +0.0 3,709,562 + Dsui_3449 0.58 -1.4 3,709,574 - Dsui_3449 0.58 -1.2 3,709,595 + Dsui_3449 0.59 -2.4 3,709,857 + Dsui_3449 0.72 -0.7 3,709,862 + Dsui_3449 0.72 -0.3 3,709,875 - Dsui_3449 0.72 -3.4 3,709,937 - Dsui_3449 0.75 -1.0 3,709,950 + Dsui_3449 0.76 -1.5 3,709,950 + Dsui_3449 0.76 +0.2 3,710,126 - Dsui_3449 0.84 -2.0 3,710,168 - Dsui_3449 0.86 -1.6 3,710,359 - -0.4 3,710,543 + -0.0 3,710,605 + +0.6 3,710,613 - -1.1 3,710,627 - +1.0 3,710,875 - Dsui_3450 0.21 +0.9 3,710,916 + Dsui_3450 0.24 +1.3 3,710,921 + Dsui_3450 0.24 +0.7 3,710,960 + Dsui_3450 0.27 +1.6 3,711,028 + Dsui_3450 0.32 +1.1 3,711,056 - Dsui_3450 0.35 +0.9 3,711,111 - Dsui_3450 0.39 +0.9 3,711,115 + Dsui_3450 0.39 +1.0 3,711,163 - Dsui_3450 0.43 +0.0 3,711,232 + Dsui_3450 0.48 +0.3 3,711,345 - Dsui_3450 0.57 -0.3 3,711,347 + Dsui_3450 0.57 +0.5 3,711,353 + Dsui_3450 0.58 +0.9 3,711,417 - Dsui_3450 0.62 -2.2 3,711,434 + Dsui_3450 0.64 +1.4 3,711,434 + Dsui_3450 0.64 +0.9 3,711,442 - Dsui_3450 0.64 +0.0
Or see this region's nucleotide sequence