Strain Fitness in Dechlorosoma suillum PS around Dsui_3261

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3260 and Dsui_3261 are separated by 116 nucleotidesDsui_3261 and Dsui_3262 are separated by 16 nucleotidesDsui_3262 and Dsui_3263 are separated by 148 nucleotides Dsui_3260: Dsui_3260 - vacuolar-type H(+)-translocating pyrophosphatase, at 3,499,080 to 3,501,149 _3260 Dsui_3261: Dsui_3261 - 6-phosphofructokinase, at 3,501,266 to 3,502,534 _3261 Dsui_3262: Dsui_3262 - adenylate kinase family protein, at 3,502,551 to 3,503,204 _3262 Dsui_3263: Dsui_3263 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 3,503,353 to 3,504,132 _3263 Position (kb) 3501 3502 3503Strain fitness (log2 ratio) -2 -1 0 1 2at 3500.446 kb on + strand, within Dsui_3260at 3500.471 kb on - strand, within Dsui_3260at 3500.660 kb on - strand, within Dsui_3260at 3500.701 kb on - strand, within Dsui_3260at 3500.749 kb on - strand, within Dsui_3260at 3500.793 kb on + strand, within Dsui_3260at 3500.793 kb on + strandat 3500.796 kb on - strand, within Dsui_3260at 3500.804 kb on + strand, within Dsui_3260at 3500.881 kb on + strand, within Dsui_3260at 3500.965 kb on - strandat 3501.000 kb on - strandat 3501.002 kb on - strandat 3501.118 kb on - strandat 3501.123 kb on - strandat 3501.128 kb on - strandat 3501.155 kb on - strandat 3501.165 kb on - strandat 3501.174 kb on + strandat 3501.174 kb on + strandat 3501.182 kb on - strandat 3501.183 kb on - strandat 3501.263 kb on + strandat 3501.271 kb on - strandat 3501.279 kb on + strandat 3501.361 kb on - strandat 3501.368 kb on - strandat 3501.472 kb on - strand, within Dsui_3261at 3501.546 kb on + strand, within Dsui_3261at 3501.546 kb on + strand, within Dsui_3261at 3501.567 kb on + strand, within Dsui_3261at 3501.575 kb on - strand, within Dsui_3261at 3501.579 kb on + strand, within Dsui_3261at 3501.585 kb on - strand, within Dsui_3261at 3501.587 kb on - strand, within Dsui_3261at 3501.602 kb on - strand, within Dsui_3261at 3501.656 kb on - strand, within Dsui_3261at 3501.776 kb on + strand, within Dsui_3261at 3501.777 kb on - strand, within Dsui_3261at 3501.808 kb on + strandat 3501.830 kb on - strand, within Dsui_3261at 3502.015 kb on + strand, within Dsui_3261at 3502.016 kb on + strand, within Dsui_3261at 3502.223 kb on + strand, within Dsui_3261at 3502.323 kb on - strand, within Dsui_3261at 3502.363 kb on - strand, within Dsui_3261at 3502.375 kb on + strand, within Dsui_3261at 3502.483 kb on + strandat 3502.557 kb on - strandat 3503.242 kb on - strandat 3503.285 kb on - strandat 3503.285 kb on - strandat 3503.286 kb on - strandat 3503.300 kb on + strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.308 kb on - strandat 3503.331 kb on - strandat 3503.333 kb on - strandat 3503.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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3,500,446 + Dsui_3260 0.66 -2.7
3,500,471 - Dsui_3260 0.67 -0.1
3,500,660 - Dsui_3260 0.76 -0.4
3,500,701 - Dsui_3260 0.78 +0.6
3,500,749 - Dsui_3260 0.81 +0.3
3,500,793 + Dsui_3260 0.83 +2.4
3,500,793 + -0.2
3,500,796 - Dsui_3260 0.83 -0.2
3,500,804 + Dsui_3260 0.83 -1.1
3,500,881 + Dsui_3260 0.87 +0.7
3,500,965 - +0.3
3,501,000 - -0.7
3,501,002 - +0.5
3,501,118 - +0.4
3,501,123 - +0.2
3,501,128 - +0.3
3,501,155 - +0.4
3,501,165 - +0.7
3,501,174 + -0.2
3,501,174 + -0.4
3,501,182 - +1.0
3,501,183 - +0.4
3,501,263 + +0.3
3,501,271 - +1.8
3,501,279 + -0.2
3,501,361 - +1.6
3,501,368 - +1.2
3,501,472 - Dsui_3261 0.16 +1.5
3,501,546 + Dsui_3261 0.22 +0.6
3,501,546 + Dsui_3261 0.22 +0.6
3,501,567 + Dsui_3261 0.24 +0.5
3,501,575 - Dsui_3261 0.24 +1.6
3,501,579 + Dsui_3261 0.25 +0.1
3,501,585 - Dsui_3261 0.25 +1.3
3,501,587 - Dsui_3261 0.25 +1.5
3,501,602 - Dsui_3261 0.26 +1.3
3,501,656 - Dsui_3261 0.31 +0.1
3,501,776 + Dsui_3261 0.40 +1.5
3,501,777 - Dsui_3261 0.40 +1.1
3,501,808 + -0.9
3,501,830 - Dsui_3261 0.44 +1.0
3,502,015 + Dsui_3261 0.59 +0.7
3,502,016 + Dsui_3261 0.59 -0.8
3,502,223 + Dsui_3261 0.75 -1.2
3,502,323 - Dsui_3261 0.83 +1.1
3,502,363 - Dsui_3261 0.86 +0.5
3,502,375 + Dsui_3261 0.87 -1.5
3,502,483 + -0.6
3,502,557 - +2.3
3,503,242 - +1.3
3,503,285 - +1.0
3,503,285 - +1.0
3,503,286 - +1.1
3,503,300 + -2.6
3,503,308 - +1.1
3,503,308 - +1.6
3,503,308 - +1.4
3,503,331 - +0.6
3,503,333 - -0.7
3,503,333 - +1.0

Or see this region's nucleotide sequence