Strain Fitness in Dechlorosoma suillum PS around Dsui_3174

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3173 and Dsui_3174 are separated by 104 nucleotidesDsui_3174 and Dsui_3175 are separated by 463 nucleotides Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376 _3173 Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902 _3174 Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901 _3175 Position (kb) 3403 3404 3405Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3402.502 kb on + strandat 3402.502 kb on + strandat 3402.558 kb on - strand, within Dsui_3173at 3402.575 kb on - strand, within Dsui_3173at 3402.585 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.621 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.833 kb on + strand, within Dsui_3173at 3402.980 kb on + strand, within Dsui_3173at 3403.006 kb on - strandat 3403.168 kb on + strand, within Dsui_3173at 3403.176 kb on - strandat 3403.176 kb on - strandat 3403.183 kb on - strandat 3403.718 kb on + strandat 3403.726 kb on - strand, within Dsui_3174at 3403.796 kb on - strand, within Dsui_3174at 3403.961 kb on + strand, within Dsui_3174at 3404.048 kb on - strand, within Dsui_3174at 3404.452 kb on + strand, within Dsui_3174at 3404.452 kb on + strand, within Dsui_3174at 3404.452 kb on + strandat 3404.460 kb on - strand, within Dsui_3174at 3404.475 kb on - strand, within Dsui_3174at 3404.595 kb on - strand, within Dsui_3174at 3404.734 kb on + strandat 3404.742 kb on - strand, within Dsui_3174at 3404.838 kb on + strandat 3404.838 kb on + strandat 3404.838 kb on + strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.846 kb on - strandat 3404.851 kb on - strandat 3404.907 kb on - strandat 3404.922 kb on + strandat 3404.930 kb on - strandat 3404.930 kb on - strandat 3405.081 kb on - strandat 3405.220 kb on + strandat 3405.466 kb on - strandat 3405.466 kb on - strandat 3405.505 kb on + strandat 3405.658 kb on + strand, within Dsui_3175at 3405.680 kb on + strandat 3405.778 kb on + strand, within Dsui_3175

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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3,402,502 + -0.3
3,402,502 + +1.2
3,402,558 - Dsui_3173 0.12 -0.5
3,402,575 - Dsui_3173 0.13 -0.9
3,402,585 - Dsui_3173 0.15 +0.0
3,402,621 - +1.8
3,402,621 - Dsui_3173 0.18 -0.5
3,402,621 - +0.5
3,402,709 + Dsui_3173 0.28 -0.3
3,402,709 + Dsui_3173 0.28 +1.0
3,402,709 + Dsui_3173 0.28 +0.7
3,402,833 + Dsui_3173 0.41 +1.4
3,402,980 + Dsui_3173 0.57 +0.8
3,403,006 - -1.9
3,403,168 + Dsui_3173 0.77 +1.4
3,403,176 - +0.1
3,403,176 - -1.4
3,403,183 - -0.1
3,403,718 + -0.2
3,403,726 - Dsui_3174 0.17 +1.0
3,403,796 - Dsui_3174 0.22 +1.2
3,403,961 + Dsui_3174 0.34 -2.5
3,404,048 - Dsui_3174 0.40 +1.4
3,404,452 + Dsui_3174 0.68 +1.6
3,404,452 + Dsui_3174 0.68 +0.4
3,404,452 + +2.8
3,404,460 - Dsui_3174 0.69 +0.9
3,404,475 - Dsui_3174 0.70 +0.5
3,404,595 - Dsui_3174 0.78 +1.0
3,404,734 + +0.4
3,404,742 - Dsui_3174 0.89 -2.3
3,404,838 + -0.6
3,404,838 + -3.6
3,404,838 + +0.3
3,404,846 - +1.2
3,404,846 - +1.6
3,404,846 - +0.9
3,404,846 - +0.0
3,404,846 - +0.8
3,404,851 - +0.8
3,404,907 - +1.1
3,404,922 + -1.5
3,404,930 - +1.3
3,404,930 - +0.8
3,405,081 - -3.2
3,405,220 + +0.6
3,405,466 - -2.4
3,405,466 - -3.3
3,405,505 + +0.2
3,405,658 + Dsui_3175 0.19 +0.3
3,405,680 + +0.1
3,405,778 + Dsui_3175 0.27 +0.9

Or see this region's nucleotide sequence