Strain Fitness in Dechlorosoma suillum PS around Dsui_3136

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3135 and Dsui_3136 are separated by 47 nucleotidesDsui_3136 and Dsui_3137 are separated by 89 nucleotidesDsui_3137 and Dsui_3138 are separated by 83 nucleotides Dsui_3135: Dsui_3135 - HflK protein, at 3,356,912 to 3,358,186 _3135 Dsui_3136: Dsui_3136 - GTP-binding protein HflX, at 3,358,234 to 3,359,421 _3136 Dsui_3137: Dsui_3137 - RNA chaperone Hfq, at 3,359,511 to 3,359,750 _3137 Dsui_3138: Dsui_3138 - ribosome-associated GTPase EngA, at 3,359,834 to 3,361,219 _3138 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3357.422 kb on - strand, within Dsui_3135at 3358.204 kb on - strandat 3358.394 kb on + strand, within Dsui_3136at 3358.501 kb on + strandat 3358.538 kb on - strand, within Dsui_3136at 3358.592 kb on - strand, within Dsui_3136at 3358.647 kb on + strand, within Dsui_3136at 3358.812 kb on - strand, within Dsui_3136at 3358.883 kb on - strand, within Dsui_3136at 3358.915 kb on - strand, within Dsui_3136at 3358.979 kb on + strand, within Dsui_3136at 3358.990 kb on + strand, within Dsui_3136at 3359.115 kb on - strand, within Dsui_3136at 3359.119 kb on - strand, within Dsui_3136at 3359.125 kb on - strand, within Dsui_3136at 3359.151 kb on + strand, within Dsui_3136at 3359.249 kb on - strand, within Dsui_3136at 3359.280 kb on - strand, within Dsui_3136at 3359.299 kb on + strand, within Dsui_3136at 3359.333 kb on + strandat 3359.333 kb on + strandat 3359.367 kb on - strandat 3359.367 kb on - strandat 3359.367 kb on - strandat 3359.532 kb on - strandat 3359.753 kb on - strandat 3359.826 kb on - strandat 3359.901 kb on - strandat 3359.901 kb on - strandat 3359.901 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
3,357,422 - Dsui_3135 0.40 -3.0
3,358,204 - +0.1
3,358,394 + Dsui_3136 0.13 -1.2
3,358,501 + +0.9
3,358,538 - Dsui_3136 0.26 +1.4
3,358,592 - Dsui_3136 0.30 +1.7
3,358,647 + Dsui_3136 0.35 +0.9
3,358,812 - Dsui_3136 0.49 +1.3
3,358,883 - Dsui_3136 0.55 +0.7
3,358,915 - Dsui_3136 0.57 -0.5
3,358,979 + Dsui_3136 0.63 +0.8
3,358,990 + Dsui_3136 0.64 -1.4
3,359,115 - Dsui_3136 0.74 +1.3
3,359,119 - Dsui_3136 0.74 +1.7
3,359,125 - Dsui_3136 0.75 +1.4
3,359,151 + Dsui_3136 0.77 +0.7
3,359,249 - Dsui_3136 0.85 +1.3
3,359,280 - Dsui_3136 0.88 +0.5
3,359,299 + Dsui_3136 0.90 -0.9
3,359,333 + -1.6
3,359,333 + -1.0
3,359,367 - +1.3
3,359,367 - +1.3
3,359,367 - +1.8
3,359,532 - -0.4
3,359,753 - +0.9
3,359,826 - +0.6
3,359,901 - -1.2
3,359,901 - +0.8
3,359,901 - +1.2

Or see this region's nucleotide sequence