Strain Fitness in Dechlorosoma suillum PS around Dsui_2930

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2928 and Dsui_2929 are separated by 108 nucleotidesDsui_2929 and Dsui_2930 are separated by 125 nucleotidesDsui_2930 and Dsui_2931 are separated by 4 nucleotidesDsui_2931 and Dsui_2932 overlap by 4 nucleotides Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652 _2928 Dsui_2929: Dsui_2929 - hypothetical protein, at 3,132,761 to 3,133,180 _2929 Dsui_2930: Dsui_2930 - outer membrane protein, at 3,133,306 to 3,134,676 _2930 Dsui_2931: Dsui_2931 - hypothetical protein, at 3,134,681 to 3,135,223 _2931 Dsui_2932: Dsui_2932 - membrane-fusion protein, at 3,135,220 to 3,136,389 _2932 Position (kb) 3133 3134 3135Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3132.328 kb on + strandat 3132.427 kb on + strand, within Dsui_2928at 3132.435 kb on - strand, within Dsui_2928at 3132.515 kb on + strand, within Dsui_2928at 3132.526 kb on + strandat 3132.565 kb on + strandat 3132.573 kb on - strandat 3132.634 kb on - strandat 3132.644 kb on - strandat 3132.776 kb on + strandat 3132.880 kb on - strandat 3132.963 kb on - strand, within Dsui_2929at 3132.973 kb on - strand, within Dsui_2929at 3133.000 kb on - strand, within Dsui_2929at 3133.007 kb on + strand, within Dsui_2929at 3133.011 kb on + strand, within Dsui_2929at 3133.250 kb on + strandat 3133.250 kb on + strandat 3133.681 kb on + strand, within Dsui_2930at 3133.802 kb on + strand, within Dsui_2930at 3133.854 kb on - strandat 3133.928 kb on + strandat 3134.295 kb on - strandat 3134.661 kb on - strandat 3134.661 kb on - strandat 3134.838 kb on + strand, within Dsui_2931at 3135.021 kb on + strandat 3135.286 kb on + strandat 3135.467 kb on + strandat 3135.475 kb on - strandat 3135.475 kb on - strandat 3135.539 kb on + strandat 3135.575 kb on + strandat 3135.577 kb on - strandat 3135.620 kb on + strandat 3135.620 kb on + strand, within Dsui_2932at 3135.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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3,132,328 + +0.2
3,132,427 + Dsui_2928 0.78 +0.9
3,132,435 - Dsui_2928 0.79 -3.6
3,132,515 + Dsui_2928 0.87 +0.9
3,132,526 + +1.1
3,132,565 + +0.7
3,132,573 - -1.1
3,132,634 - -0.7
3,132,644 - -0.8
3,132,776 + +1.1
3,132,880 - -1.0
3,132,963 - Dsui_2929 0.48 -1.8
3,132,973 - Dsui_2929 0.50 +0.0
3,133,000 - Dsui_2929 0.57 +0.4
3,133,007 + Dsui_2929 0.59 +0.6
3,133,011 + Dsui_2929 0.60 +2.0
3,133,250 + +1.8
3,133,250 + +0.8
3,133,681 + Dsui_2930 0.27 -0.8
3,133,802 + Dsui_2930 0.36 +0.3
3,133,854 - +2.1
3,133,928 + -1.7
3,134,295 - -1.3
3,134,661 - -2.5
3,134,661 - +0.9
3,134,838 + Dsui_2931 0.29 -1.6
3,135,021 + -3.8
3,135,286 + -1.3
3,135,467 + -1.9
3,135,475 - -2.8
3,135,475 - -2.4
3,135,539 + -0.3
3,135,575 + -0.4
3,135,577 - +1.3
3,135,620 + -1.3
3,135,620 + Dsui_2932 0.34 -0.5
3,135,674 - -2.4

Or see this region's nucleotide sequence