Strain Fitness in Dechlorosoma suillum PS around Dsui_2771

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2770 and Dsui_2771 are separated by 103 nucleotidesDsui_2771 and Dsui_2772 are separated by 209 nucleotides Dsui_2770: Dsui_2770 - penicillin-binding protein 1C, at 2,932,961 to 2,935,231 _2770 Dsui_2771: Dsui_2771 - hypothetical protein, at 2,935,335 to 2,935,880 _2771 Dsui_2772: Dsui_2772 - uncharacterized protein, possibly involved in aromatic compounds catabolism, at 2,936,090 to 2,936,551 _2772 Position (kb) 2935 2936Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2934.384 kb on - strandat 2934.471 kb on - strandat 2934.602 kb on + strandat 2934.996 kb on + strandat 2935.199 kb on - strandat 2935.397 kb on + strandat 2935.397 kb on + strandat 2935.405 kb on - strand, within Dsui_2771at 2935.405 kb on - strand, within Dsui_2771at 2935.425 kb on - strand, within Dsui_2771at 2935.467 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.472 kb on - strand, within Dsui_2771at 2935.485 kb on - strand, within Dsui_2771at 2935.522 kb on - strand, within Dsui_2771at 2935.534 kb on - strand, within Dsui_2771at 2935.564 kb on + strandat 2935.572 kb on - strand, within Dsui_2771at 2935.572 kb on - strand, within Dsui_2771at 2935.701 kb on + strandat 2935.855 kb on - strandat 2936.106 kb on - strandat 2936.230 kb on - strand, within Dsui_2772at 2936.241 kb on - strand, within Dsui_2772at 2936.440 kb on - strand, within Dsui_2772at 2936.501 kb on - strand, within Dsui_2772at 2936.662 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
remove
2,934,384 - -1.8
2,934,471 - -1.9
2,934,602 + +0.9
2,934,996 + -1.8
2,935,199 - -0.7
2,935,397 + -2.2
2,935,397 + -0.0
2,935,405 - Dsui_2771 0.13 +0.8
2,935,405 - Dsui_2771 0.13 +0.2
2,935,425 - Dsui_2771 0.16 +0.9
2,935,467 - Dsui_2771 0.24 +0.9
2,935,472 - Dsui_2771 0.25 +1.5
2,935,472 - Dsui_2771 0.25 +1.6
2,935,485 - Dsui_2771 0.27 +3.1
2,935,522 - Dsui_2771 0.34 +1.2
2,935,534 - Dsui_2771 0.36 +1.8
2,935,564 + +1.4
2,935,572 - Dsui_2771 0.43 +1.5
2,935,572 - Dsui_2771 0.43 +1.2
2,935,701 + -0.6
2,935,855 - +1.0
2,936,106 - +0.8
2,936,230 - Dsui_2772 0.30 +0.2
2,936,241 - Dsui_2772 0.33 +0.8
2,936,440 - Dsui_2772 0.76 +0.9
2,936,501 - Dsui_2772 0.89 +1.2
2,936,662 - +2.0

Or see this region's nucleotide sequence