Strain Fitness in Dechlorosoma suillum PS around Dsui_2730

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2728 and Dsui_2729 are separated by 13 nucleotidesDsui_2729 and Dsui_2730 are separated by 68 nucleotidesDsui_2730 and Dsui_2731 are separated by 11 nucleotidesDsui_2731 and Dsui_2732 are separated by 79 nucleotides Dsui_2728: Dsui_2728 - tryptophanyl-tRNA synthetase, at 2,883,715 to 2,884,917 _2728 Dsui_2729: Dsui_2729 - Zn-dependent protease, at 2,884,931 to 2,885,584 _2729 Dsui_2730: Dsui_2730 - Sua5/YciO/YrdC/YwlC family protein, at 2,885,653 to 2,886,276 _2730 Dsui_2731: Dsui_2731 - putative metal-dependent phosphoesterase, PHP family, at 2,886,288 to 2,887,127 _2731 Dsui_2732: Dsui_2732 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,887,207 to 2,888,073 _2732 Position (kb) 2885 2886 2887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2884.982 kb on - strandat 2885.081 kb on - strand, within Dsui_2729at 2885.128 kb on - strand, within Dsui_2729at 2885.167 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.565 kb on + strandat 2885.636 kb on - strandat 2885.641 kb on - strandat 2885.768 kb on + strandat 2885.776 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.800 kb on + strandat 2886.034 kb on - strand, within Dsui_2730at 2886.053 kb on + strandat 2886.063 kb on + strandat 2886.073 kb on + strand, within Dsui_2730at 2886.226 kb on - strandat 2886.226 kb on - strandat 2886.266 kb on + strandat 2886.319 kb on - strandat 2886.319 kb on - strandat 2886.339 kb on - strandat 2886.352 kb on + strandat 2886.362 kb on + strandat 2886.365 kb on - strandat 2886.365 kb on - strandat 2886.453 kb on - strand, within Dsui_2731at 2886.485 kb on - strand, within Dsui_2731at 2886.498 kb on - strand, within Dsui_2731at 2886.513 kb on + strand, within Dsui_2731at 2886.608 kb on - strand, within Dsui_2731at 2886.610 kb on + strand, within Dsui_2731at 2886.618 kb on - strand, within Dsui_2731at 2886.628 kb on - strand, within Dsui_2731at 2886.642 kb on - strand, within Dsui_2731at 2886.676 kb on + strand, within Dsui_2731at 2886.789 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.948 kb on + strand, within Dsui_2731at 2887.019 kb on - strand, within Dsui_2731at 2887.131 kb on - strandat 2887.149 kb on + strandat 2887.149 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,884,982 - +1.1
2,885,081 - Dsui_2729 0.23 +1.4
2,885,128 - Dsui_2729 0.30 +0.7
2,885,167 - Dsui_2729 0.36 +1.1
2,885,208 - Dsui_2729 0.42 +0.7
2,885,208 - Dsui_2729 0.42 -0.2
2,885,208 - Dsui_2729 0.42 +0.1
2,885,208 - Dsui_2729 0.42 +0.4
2,885,565 + -3.8
2,885,636 - +0.8
2,885,641 - +1.8
2,885,768 + -1.5
2,885,776 - Dsui_2730 0.20 +1.6
2,885,799 - Dsui_2730 0.23 +1.5
2,885,799 - Dsui_2730 0.23 +1.5
2,885,800 + -0.7
2,886,034 - Dsui_2730 0.61 +1.2
2,886,053 + -0.3
2,886,063 + -2.0
2,886,073 + Dsui_2730 0.67 +0.1
2,886,226 - +0.4
2,886,226 - +1.3
2,886,266 + -3.0
2,886,319 - +0.1
2,886,319 - +0.4
2,886,339 - +2.7
2,886,352 + -2.6
2,886,362 + +1.6
2,886,365 - +1.3
2,886,365 - +2.9
2,886,453 - Dsui_2731 0.20 +0.0
2,886,485 - Dsui_2731 0.23 +0.1
2,886,498 - Dsui_2731 0.25 +0.9
2,886,513 + Dsui_2731 0.27 +0.1
2,886,608 - Dsui_2731 0.38 +1.6
2,886,610 + Dsui_2731 0.38 -1.5
2,886,618 - Dsui_2731 0.39 +1.2
2,886,628 - Dsui_2731 0.40 +0.1
2,886,642 - Dsui_2731 0.42 +1.2
2,886,676 + Dsui_2731 0.46 -2.7
2,886,789 - Dsui_2731 0.60 +0.3
2,886,945 - Dsui_2731 0.78 +1.3
2,886,945 - Dsui_2731 0.78 +0.5
2,886,945 - Dsui_2731 0.78 +1.1
2,886,948 + Dsui_2731 0.79 -2.8
2,887,019 - Dsui_2731 0.87 +0.7
2,887,131 - +1.4
2,887,149 + -1.0
2,887,149 + -1.6

Or see this region's nucleotide sequence