Strain Fitness in Dechlorosoma suillum PS around Dsui_2710

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2708 and Dsui_2709 are separated by 22 nucleotidesDsui_2709 and Dsui_2710 are separated by 59 nucleotidesDsui_2710 and Dsui_2711 are separated by 22 nucleotides Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732 _2708 Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573 _2709 Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814 _2710 Dsui_2711: Dsui_2711 - succinyl-diaminopimelate desuccinylase, at 2,867,837 to 2,868,988 _2711 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2865.709 kb on - strandat 2865.726 kb on + strandat 2865.727 kb on + strandat 2866.577 kb on + strandat 2866.582 kb on + strandat 2866.650 kb on + strandat 2866.794 kb on + strand, within Dsui_2710at 2866.802 kb on - strand, within Dsui_2710at 2866.817 kb on + strand, within Dsui_2710at 2866.834 kb on + strand, within Dsui_2710at 2866.920 kb on - strand, within Dsui_2710at 2866.953 kb on - strandat 2866.955 kb on + strand, within Dsui_2710at 2866.955 kb on + strand, within Dsui_2710at 2866.955 kb on + strand, within Dsui_2710at 2866.955 kb on + strand, within Dsui_2710at 2867.094 kb on + strand, within Dsui_2710at 2867.202 kb on - strand, within Dsui_2710at 2867.272 kb on + strand, within Dsui_2710at 2867.272 kb on + strand, within Dsui_2710at 2867.272 kb on + strand, within Dsui_2710at 2867.285 kb on - strand, within Dsui_2710at 2867.417 kb on - strand, within Dsui_2710at 2867.498 kb on + strand, within Dsui_2710at 2867.508 kb on + strand, within Dsui_2710at 2867.539 kb on - strandat 2867.541 kb on + strand, within Dsui_2710at 2867.584 kb on - strand, within Dsui_2710at 2867.642 kb on + strand, within Dsui_2710at 2867.659 kb on + strand, within Dsui_2710at 2867.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,865,709 - -1.3
2,865,726 + +1.5
2,865,727 + +1.1
2,866,577 + +1.3
2,866,582 + +2.0
2,866,650 + +1.5
2,866,794 + Dsui_2710 0.14 +1.5
2,866,802 - Dsui_2710 0.14 -1.7
2,866,817 + Dsui_2710 0.16 +2.0
2,866,834 + Dsui_2710 0.17 +0.6
2,866,920 - Dsui_2710 0.24 -1.2
2,866,953 - -2.4
2,866,955 + Dsui_2710 0.27 +1.4
2,866,955 + Dsui_2710 0.27 +0.9
2,866,955 + Dsui_2710 0.27 +0.0
2,866,955 + Dsui_2710 0.27 +0.2
2,867,094 + Dsui_2710 0.39 +1.8
2,867,202 - Dsui_2710 0.48 -0.6
2,867,272 + Dsui_2710 0.54 +0.4
2,867,272 + Dsui_2710 0.54 +1.5
2,867,272 + Dsui_2710 0.54 -0.1
2,867,285 - Dsui_2710 0.55 -1.1
2,867,417 - Dsui_2710 0.66 -2.8
2,867,498 + Dsui_2710 0.73 +0.5
2,867,508 + Dsui_2710 0.74 +1.6
2,867,539 - -0.9
2,867,541 + Dsui_2710 0.77 +2.0
2,867,584 - Dsui_2710 0.80 -0.9
2,867,642 + Dsui_2710 0.85 +1.4
2,867,659 + Dsui_2710 0.87 -0.3
2,867,823 + +1.4

Or see this region's nucleotide sequence