Strain Fitness in Dechlorosoma suillum PS around Dsui_2572

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2571 and Dsui_2572 overlap by 14 nucleotidesDsui_2572 and Dsui_2573 are separated by 133 nucleotidesDsui_2573 and Dsui_2574 are separated by 68 nucleotides Dsui_2571: Dsui_2571 - hypothetical protein, at 2,720,776 to 2,721,468 _2571 Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548 _2572 Dsui_2573: Dsui_2573 - hypothetical protein, at 2,723,682 to 2,723,906 _2573 Dsui_2574: Dsui_2574 - integral membrane protein (PIN domain superfamily), at 2,723,975 to 2,725,099 _2574 Position (kb) 2721 2722 2723 2724Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2720.471 kb on + strandat 2720.520 kb on + strandat 2720.528 kb on - strandat 2720.530 kb on + strandat 2720.540 kb on + strandat 2720.559 kb on - strandat 2720.648 kb on + strandat 2720.658 kb on + strandat 2720.658 kb on + strandat 2720.663 kb on + strandat 2720.664 kb on + strandat 2720.668 kb on + strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.671 kb on - strandat 2720.673 kb on + strandat 2720.674 kb on + strandat 2720.674 kb on + strandat 2720.681 kb on - strandat 2720.681 kb on - strandat 2720.737 kb on + strandat 2720.738 kb on - strandat 2720.738 kb on - strandat 2720.738 kb on - strandat 2720.744 kb on + strandat 2720.752 kb on - strandat 2720.764 kb on + strandat 2720.774 kb on + strandat 2720.779 kb on + strandat 2720.781 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.787 kb on - strandat 2720.844 kb on + strandat 2720.852 kb on - strand, within Dsui_2571at 2720.890 kb on - strand, within Dsui_2571at 2720.890 kb on - strand, within Dsui_2571at 2720.905 kb on + strandat 2720.913 kb on - strand, within Dsui_2571at 2720.964 kb on - strand, within Dsui_2571at 2720.993 kb on + strand, within Dsui_2571at 2720.999 kb on - strand, within Dsui_2571at 2721.001 kb on - strand, within Dsui_2571at 2721.078 kb on + strand, within Dsui_2571at 2721.097 kb on - strand, within Dsui_2571at 2721.164 kb on - strand, within Dsui_2571at 2721.200 kb on + strand, within Dsui_2571at 2721.235 kb on + strand, within Dsui_2571at 2721.249 kb on + strand, within Dsui_2571at 2721.257 kb on - strand, within Dsui_2571at 2721.300 kb on + strand, within Dsui_2571at 2721.300 kb on + strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.308 kb on - strand, within Dsui_2571at 2721.325 kb on - strand, within Dsui_2571at 2721.404 kb on + strandat 2721.424 kb on - strandat 2721.440 kb on - strandat 2721.440 kb on - strandat 2721.489 kb on + strandat 2721.489 kb on + strandat 2721.497 kb on - strandat 2721.507 kb on - strandat 2721.535 kb on - strandat 2721.594 kb on - strandat 2721.626 kb on + strandat 2721.626 kb on + strandat 2721.634 kb on - strandat 2721.660 kb on + strandat 2721.783 kb on - strand, within Dsui_2572at 2721.809 kb on + strand, within Dsui_2572at 2721.829 kb on - strand, within Dsui_2572at 2721.857 kb on + strand, within Dsui_2572at 2721.895 kb on - strand, within Dsui_2572at 2721.920 kb on - strand, within Dsui_2572at 2721.925 kb on - strand, within Dsui_2572at 2722.067 kb on + strand, within Dsui_2572at 2722.068 kb on + strand, within Dsui_2572at 2722.145 kb on + strand, within Dsui_2572at 2722.177 kb on - strand, within Dsui_2572at 2722.213 kb on - strand, within Dsui_2572at 2722.215 kb on + strand, within Dsui_2572at 2722.224 kb on + strand, within Dsui_2572at 2722.261 kb on - strand, within Dsui_2572at 2722.358 kb on - strand, within Dsui_2572at 2722.398 kb on - strand, within Dsui_2572at 2722.400 kb on - strand, within Dsui_2572at 2722.462 kb on + strand, within Dsui_2572at 2722.492 kb on + strand, within Dsui_2572at 2722.500 kb on - strand, within Dsui_2572at 2722.530 kb on - strand, within Dsui_2572at 2722.621 kb on + strand, within Dsui_2572at 2722.629 kb on - strand, within Dsui_2572at 2722.676 kb on - strand, within Dsui_2572at 2722.712 kb on + strandat 2722.769 kb on + strand, within Dsui_2572at 2722.890 kb on + strand, within Dsui_2572at 2722.905 kb on - strand, within Dsui_2572at 2722.987 kb on + strand, within Dsui_2572at 2722.987 kb on + strand, within Dsui_2572at 2722.995 kb on - strand, within Dsui_2572at 2723.001 kb on - strand, within Dsui_2572at 2723.002 kb on - strand, within Dsui_2572at 2723.012 kb on + strand, within Dsui_2572at 2723.017 kb on + strand, within Dsui_2572at 2723.017 kb on + strand, within Dsui_2572at 2723.017 kb on + strand, within Dsui_2572at 2723.025 kb on - strand, within Dsui_2572at 2723.025 kb on - strand, within Dsui_2572at 2723.025 kb on - strand, within Dsui_2572at 2723.025 kb on - strand, within Dsui_2572at 2723.145 kb on + strand, within Dsui_2572at 2723.153 kb on - strand, within Dsui_2572at 2723.204 kb on + strand, within Dsui_2572at 2723.231 kb on - strand, within Dsui_2572at 2723.251 kb on + strand, within Dsui_2572at 2723.295 kb on - strand, within Dsui_2572at 2723.325 kb on - strand, within Dsui_2572at 2723.325 kb on - strand, within Dsui_2572at 2723.335 kb on - strand, within Dsui_2572at 2723.382 kb on - strandat 2723.403 kb on - strandat 2723.413 kb on - strandat 2723.413 kb on - strandat 2723.515 kb on - strandat 2723.546 kb on - strandat 2723.690 kb on + strandat 2723.731 kb on - strand, within Dsui_2573at 2723.773 kb on - strand, within Dsui_2573at 2723.864 kb on + strand, within Dsui_2573at 2723.872 kb on - strand, within Dsui_2573at 2723.888 kb on + strandat 2723.903 kb on + strandat 2723.919 kb on - strandat 2723.921 kb on - strandat 2723.986 kb on - strandat 2724.005 kb on - strandat 2724.010 kb on - strandat 2724.018 kb on - strandat 2724.027 kb on + strandat 2724.033 kb on - strandat 2724.033 kb on - strandat 2724.040 kb on - strandat 2724.070 kb on + strandat 2724.097 kb on - strand, within Dsui_2574at 2724.149 kb on + strand, within Dsui_2574at 2724.149 kb on + strand, within Dsui_2574at 2724.213 kb on + strand, within Dsui_2574at 2724.277 kb on + strand, within Dsui_2574at 2724.308 kb on + strand, within Dsui_2574at 2724.342 kb on - strand, within Dsui_2574at 2724.353 kb on + strand, within Dsui_2574at 2724.476 kb on - strand, within Dsui_2574at 2724.491 kb on - strand, within Dsui_2574at 2724.520 kb on - strand, within Dsui_2574at 2724.534 kb on - strand, within Dsui_2574

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,720,471 + -1.2
2,720,520 + -2.4
2,720,528 - +0.3
2,720,530 + -0.7
2,720,540 + -0.3
2,720,559 - +0.6
2,720,648 + -3.0
2,720,658 + -2.3
2,720,658 + -2.2
2,720,663 + -1.0
2,720,664 + -2.2
2,720,668 + -0.2
2,720,671 - +0.7
2,720,671 - +2.2
2,720,671 - +1.7
2,720,671 - +0.4
2,720,673 + -1.8
2,720,674 + +0.2
2,720,674 + -3.1
2,720,681 - -0.5
2,720,681 - +0.3
2,720,737 + -1.6
2,720,738 - +1.0
2,720,738 - -0.1
2,720,738 - -0.7
2,720,744 + -3.8
2,720,752 - -0.4
2,720,764 + -1.6
2,720,774 + -1.4
2,720,779 + +0.7
2,720,781 - +0.5
2,720,787 - +1.1
2,720,787 - -3.1
2,720,787 - +0.3
2,720,787 - -0.5
2,720,844 + +0.7
2,720,852 - Dsui_2571 0.11 -1.8
2,720,890 - Dsui_2571 0.16 -2.2
2,720,890 - Dsui_2571 0.16 +0.2
2,720,905 + -0.4
2,720,913 - Dsui_2571 0.20 +1.2
2,720,964 - Dsui_2571 0.27 +0.5
2,720,993 + Dsui_2571 0.31 +0.4
2,720,999 - Dsui_2571 0.32 +0.3
2,721,001 - Dsui_2571 0.32 -0.1
2,721,078 + Dsui_2571 0.44 -0.3
2,721,097 - Dsui_2571 0.46 +0.5
2,721,164 - Dsui_2571 0.56 -0.2
2,721,200 + Dsui_2571 0.61 -2.8
2,721,235 + Dsui_2571 0.66 -2.0
2,721,249 + Dsui_2571 0.68 -1.8
2,721,257 - Dsui_2571 0.69 -0.1
2,721,300 + Dsui_2571 0.76 -2.3
2,721,300 + Dsui_2571 0.76 +0.6
2,721,308 - Dsui_2571 0.77 -0.1
2,721,308 - Dsui_2571 0.77 +0.5
2,721,308 - Dsui_2571 0.77 +0.3
2,721,308 - Dsui_2571 0.77 +0.4
2,721,325 - Dsui_2571 0.79 -1.1
2,721,404 + -0.8
2,721,424 - +0.1
2,721,440 - +0.2
2,721,440 - -1.3
2,721,489 + -1.6
2,721,489 + -0.5
2,721,497 - +0.0
2,721,507 - -0.8
2,721,535 - -0.1
2,721,594 - +1.2
2,721,626 + +0.1
2,721,626 + +1.0
2,721,634 - -0.1
2,721,660 + -1.9
2,721,783 - Dsui_2572 0.16 -3.1
2,721,809 + Dsui_2572 0.17 -2.6
2,721,829 - Dsui_2572 0.18 -1.2
2,721,857 + Dsui_2572 0.19 -2.2
2,721,895 - Dsui_2572 0.21 +0.6
2,721,920 - Dsui_2572 0.22 -0.2
2,721,925 - Dsui_2572 0.22 -3.0
2,722,067 + Dsui_2572 0.29 -2.0
2,722,068 + Dsui_2572 0.29 -1.0
2,722,145 + Dsui_2572 0.33 +0.2
2,722,177 - Dsui_2572 0.34 +1.2
2,722,213 - Dsui_2572 0.36 +0.2
2,722,215 + Dsui_2572 0.36 -0.8
2,722,224 + Dsui_2572 0.37 -2.8
2,722,261 - Dsui_2572 0.38 +0.2
2,722,358 - Dsui_2572 0.43 -0.9
2,722,398 - Dsui_2572 0.45 -2.5
2,722,400 - Dsui_2572 0.45 -1.4
2,722,462 + Dsui_2572 0.48 -1.8
2,722,492 + Dsui_2572 0.50 -2.3
2,722,500 - Dsui_2572 0.50 -0.4
2,722,530 - Dsui_2572 0.51 -3.3
2,722,621 + Dsui_2572 0.56 -2.2
2,722,629 - Dsui_2572 0.56 -2.1
2,722,676 - Dsui_2572 0.58 -3.6
2,722,712 + -0.8
2,722,769 + Dsui_2572 0.63 -2.8
2,722,890 + Dsui_2572 0.69 -1.0
2,722,905 - Dsui_2572 0.69 +0.0
2,722,987 + Dsui_2572 0.73 +0.1
2,722,987 + Dsui_2572 0.73 +0.5
2,722,995 - Dsui_2572 0.74 -0.1
2,723,001 - Dsui_2572 0.74 -0.8
2,723,002 - Dsui_2572 0.74 +0.4
2,723,012 + Dsui_2572 0.74 -0.7
2,723,017 + Dsui_2572 0.75 -0.5
2,723,017 + Dsui_2572 0.75 -1.6
2,723,017 + Dsui_2572 0.75 -1.0
2,723,025 - Dsui_2572 0.75 -2.3
2,723,025 - Dsui_2572 0.75 +2.0
2,723,025 - Dsui_2572 0.75 +0.0
2,723,025 - Dsui_2572 0.75 -1.9
2,723,145 + Dsui_2572 0.81 -1.5
2,723,153 - Dsui_2572 0.81 +0.1
2,723,204 + Dsui_2572 0.84 -0.4
2,723,231 - Dsui_2572 0.85 -2.3
2,723,251 + Dsui_2572 0.86 -1.5
2,723,295 - Dsui_2572 0.88 -2.8
2,723,325 - Dsui_2572 0.89 -2.5
2,723,325 - Dsui_2572 0.89 +0.8
2,723,335 - Dsui_2572 0.90 +0.6
2,723,382 - -3.0
2,723,403 - -0.5
2,723,413 - -0.5
2,723,413 - -0.2
2,723,515 - -3.9
2,723,546 - -2.5
2,723,690 + +1.2
2,723,731 - Dsui_2573 0.22 -0.5
2,723,773 - Dsui_2573 0.40 +1.4
2,723,864 + Dsui_2573 0.81 +1.3
2,723,872 - Dsui_2573 0.84 -2.4
2,723,888 + +0.9
2,723,903 + +0.7
2,723,919 - -0.1
2,723,921 - -4.3
2,723,986 - +0.1
2,724,005 - +0.2
2,724,010 - +1.9
2,724,018 - -1.5
2,724,027 + -1.9
2,724,033 - +0.2
2,724,033 - -0.8
2,724,040 - -0.7
2,724,070 + -2.4
2,724,097 - Dsui_2574 0.11 +0.7
2,724,149 + Dsui_2574 0.15 +0.6
2,724,149 + Dsui_2574 0.15 -1.1
2,724,213 + Dsui_2574 0.21 -2.9
2,724,277 + Dsui_2574 0.27 -2.8
2,724,308 + Dsui_2574 0.30 +0.8
2,724,342 - Dsui_2574 0.33 +0.8
2,724,353 + Dsui_2574 0.34 -0.8
2,724,476 - Dsui_2574 0.45 -0.1
2,724,491 - Dsui_2574 0.46 +2.0
2,724,520 - Dsui_2574 0.48 +0.4
2,724,534 - Dsui_2574 0.50 -4.8

Or see this region's nucleotide sequence