Strain Fitness in Dechlorosoma suillum PS around Dsui_2365

Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2364 and Dsui_2365 are separated by 0 nucleotidesDsui_2365 and Dsui_2366 are separated by 84 nucleotidesDsui_2366 and Dsui_2367 are separated by 101 nucleotides Dsui_2364: Dsui_2364 - ABC-type sugar transport system, periplasmic component, at 2,513,766 to 2,514,707 _2364 Dsui_2365: Dsui_2365 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,514,708 to 2,517,632 _2365 Dsui_2366: Dsui_2366 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 2,517,717 to 2,518,520 _2366 Dsui_2367: Dsui_2367 - RNA methyltransferase, TrmH family, group 1, at 2,518,622 to 2,519,401 _2367 Position (kb) 2514 2515 2516 2517 2518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2513.798 kb on + strandat 2513.819 kb on + strandat 2513.821 kb on - strandat 2513.875 kb on + strand, within Dsui_2364at 2513.877 kb on + strand, within Dsui_2364at 2513.910 kb on + strandat 2514.031 kb on + strandat 2514.094 kb on - strandat 2514.101 kb on - strandat 2514.156 kb on + strand, within Dsui_2364at 2514.162 kb on - strandat 2514.190 kb on - strandat 2514.271 kb on + strand, within Dsui_2364at 2514.337 kb on + strand, within Dsui_2364at 2514.337 kb on + strand, within Dsui_2364at 2514.457 kb on + strand, within Dsui_2364at 2514.457 kb on + strand, within Dsui_2364at 2514.491 kb on - strandat 2514.520 kb on + strand, within Dsui_2364at 2514.564 kb on + strand, within Dsui_2364at 2514.571 kb on + strand, within Dsui_2364at 2514.791 kb on + strandat 2514.894 kb on + strandat 2514.955 kb on + strandat 2514.963 kb on - strandat 2515.015 kb on - strandat 2515.075 kb on + strandat 2515.081 kb on - strandat 2515.083 kb on + strand, within Dsui_2365at 2515.110 kb on + strand, within Dsui_2365at 2515.198 kb on - strand, within Dsui_2365at 2515.281 kb on + strand, within Dsui_2365at 2515.361 kb on + strand, within Dsui_2365at 2515.414 kb on - strandat 2515.468 kb on + strand, within Dsui_2365at 2515.494 kb on - strandat 2515.593 kb on - strandat 2515.625 kb on + strandat 2515.630 kb on + strand, within Dsui_2365at 2515.750 kb on - strandat 2515.802 kb on + strand, within Dsui_2365at 2515.802 kb on + strandat 2515.802 kb on + strand, within Dsui_2365at 2515.817 kb on + strandat 2515.884 kb on + strand, within Dsui_2365at 2515.897 kb on - strand, within Dsui_2365at 2516.032 kb on + strand, within Dsui_2365at 2516.274 kb on + strand, within Dsui_2365at 2516.356 kb on + strandat 2516.411 kb on - strand, within Dsui_2365at 2516.423 kb on + strand, within Dsui_2365at 2516.455 kb on - strand, within Dsui_2365at 2516.479 kb on - strand, within Dsui_2365at 2516.479 kb on - strandat 2516.479 kb on - strand, within Dsui_2365at 2516.506 kb on - strandat 2516.711 kb on - strand, within Dsui_2365at 2516.833 kb on - strandat 2516.930 kb on - strandat 2516.993 kb on + strand, within Dsui_2365at 2517.276 kb on + strand, within Dsui_2365at 2517.277 kb on + strand, within Dsui_2365at 2517.304 kb on + strand, within Dsui_2365at 2517.323 kb on + strand, within Dsui_2365at 2517.350 kb on - strandat 2517.350 kb on - strandat 2517.512 kb on - strandat 2517.527 kb on + strandat 2517.535 kb on - strandat 2517.762 kb on - strandat 2517.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
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2,513,798 + +0.7
2,513,819 + +2.4
2,513,821 - -2.4
2,513,875 + Dsui_2364 0.12 +0.9
2,513,877 + Dsui_2364 0.12 +0.3
2,513,910 + -1.3
2,514,031 + -0.3
2,514,094 - +0.9
2,514,101 - -2.4
2,514,156 + Dsui_2364 0.41 +1.4
2,514,162 - -0.3
2,514,190 - -0.3
2,514,271 + Dsui_2364 0.54 -0.3
2,514,337 + Dsui_2364 0.61 -0.8
2,514,337 + Dsui_2364 0.61 -1.1
2,514,457 + Dsui_2364 0.73 +0.0
2,514,457 + Dsui_2364 0.73 +0.2
2,514,491 - -1.5
2,514,520 + Dsui_2364 0.80 -0.6
2,514,564 + Dsui_2364 0.85 +0.9
2,514,571 + Dsui_2364 0.85 +1.5
2,514,791 + -0.3
2,514,894 + +0.5
2,514,955 + -1.8
2,514,963 - -2.3
2,515,015 - -0.3
2,515,075 + +0.6
2,515,081 - -1.8
2,515,083 + Dsui_2365 0.13 +1.8
2,515,110 + Dsui_2365 0.14 -0.1
2,515,198 - Dsui_2365 0.17 +1.1
2,515,281 + Dsui_2365 0.20 -1.0
2,515,361 + Dsui_2365 0.22 -3.0
2,515,414 - +1.1
2,515,468 + Dsui_2365 0.26 -1.5
2,515,494 - -1.5
2,515,593 - -1.5
2,515,625 + -2.5
2,515,630 + Dsui_2365 0.32 -3.3
2,515,750 - -0.7
2,515,802 + Dsui_2365 0.37 +0.4
2,515,802 + -1.5
2,515,802 + Dsui_2365 0.37 -1.5
2,515,817 + -0.8
2,515,884 + Dsui_2365 0.40 -0.6
2,515,897 - Dsui_2365 0.41 -1.0
2,516,032 + Dsui_2365 0.45 -2.3
2,516,274 + Dsui_2365 0.54 -0.6
2,516,356 + -3.5
2,516,411 - Dsui_2365 0.58 -0.3
2,516,423 + Dsui_2365 0.59 -0.5
2,516,455 - Dsui_2365 0.60 +0.2
2,516,479 - Dsui_2365 0.61 -1.4
2,516,479 - +0.3
2,516,479 - Dsui_2365 0.61 -0.6
2,516,506 - +0.4
2,516,711 - Dsui_2365 0.68 +0.6
2,516,833 - -1.3
2,516,930 - -1.0
2,516,993 + Dsui_2365 0.78 -2.1
2,517,276 + Dsui_2365 0.88 -1.3
2,517,277 + Dsui_2365 0.88 +1.1
2,517,304 + Dsui_2365 0.89 +0.2
2,517,323 + Dsui_2365 0.89 -0.1
2,517,350 - -4.0
2,517,350 - +1.2
2,517,512 - +0.1
2,517,527 + -3.1
2,517,535 - -0.8
2,517,762 - +1.8
2,517,762 - +0.6

Or see this region's nucleotide sequence