Experiment: incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2257 and Dsui_2258 are separated by 135 nucleotides Dsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2259 and Dsui_2260 are separated by 348 nucleotides
Dsui_2257: Dsui_2257 - transcriptional regulator, at 2,406,494 to 2,407,450
_2257
Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921
_2258
Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198
_2259
Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013
_2260
Position (kb)
2408
2409 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2407.208 kb on + strand, within Dsui_2257 at 2407.284 kb on + strand, within Dsui_2257 at 2407.292 kb on - strand at 2407.356 kb on + strand at 2407.455 kb on + strand at 2407.513 kb on - strand at 2407.580 kb on - strand at 2407.614 kb on - strand at 2407.627 kb on + strand, within Dsui_2258 at 2407.982 kb on - strand at 2408.011 kb on - strand at 2408.059 kb on - strand, within Dsui_2259 at 2408.157 kb on - strand, within Dsui_2259 at 2408.191 kb on - strand at 2408.193 kb on - strand at 2408.590 kb on - strand at 2408.634 kb on + strand at 2408.639 kb on + strand at 2408.686 kb on - strand at 2408.766 kb on + strand at 2408.892 kb on - strand at 2408.939 kb on - strand at 2408.942 kb on + strand at 2408.996 kb on + strand, within Dsui_2260 at 2408.999 kb on + strand at 2409.004 kb on - strand, within Dsui_2260 at 2409.015 kb on - strand, within Dsui_2260 at 2409.022 kb on + strand at 2409.025 kb on - strand at 2409.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours remove 2,407,208 + Dsui_2257 0.75 +2.5 2,407,284 + Dsui_2257 0.83 +3.0 2,407,292 - +1.0 2,407,356 + +1.9 2,407,455 + +1.0 2,407,513 - -0.4 2,407,580 - +0.2 2,407,614 - +0.6 2,407,627 + Dsui_2258 0.12 +1.9 2,407,982 - -1.8 2,408,011 - +1.6 2,408,059 - Dsui_2259 0.27 +1.1 2,408,157 - Dsui_2259 0.78 +1.3 2,408,191 - +0.9 2,408,193 - +1.1 2,408,590 - -2.2 2,408,634 + -1.4 2,408,639 + -2.7 2,408,686 - +1.1 2,408,766 + -2.7 2,408,892 - -0.9 2,408,939 - +1.0 2,408,942 + -1.2 2,408,996 + Dsui_2260 0.31 -1.7 2,408,999 + -1.6 2,409,004 - Dsui_2260 0.31 -0.0 2,409,015 - Dsui_2260 0.32 +0.0 2,409,022 + -1.5 2,409,025 - +3.7 2,409,135 - +0.5
Or see this region's nucleotide sequence